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Report for CCDS12551.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12551.2 Public Homo sapiens 19 CCNP 24 110 108 CCDS HistoryNCBI Gene:79935Re-query CCDS DB by CCDS ID:12551.2Re-query CCDS DB by GeneID:79935See the combined annotation on chromosome 19 in Sequence Viewer

Public Note for CCDS 12551.1
The coding region has been updated to represent an alternative transcript variant that is more likely to be protein-coding, resulting in a protein that contains a longer cyclin domain and an extended C-terminus. The previous representation was a candidate for nonsense-mediated mRNA decay (NMD).

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 12551.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000430325.7 ENSP00000396755.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000430325.7Link to Ensembl Protein Viewer:ENSP00000396755.2Re-query CCDS DB by Nucleotide ID:ENST00000430325Re-query CCDS DB by Protein ID:ENSP00000396755
Original member Current member NCBI NM_024877.4 NP_079153.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024877.4Link to Protein Sequence:NP_079153.2Re-query CCDS DB by Nucleotide ID:NM_024877Re-query CCDS DB by Protein ID:NP_079153Link to BLAST:NP_079153.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079153.2 307 Q9H8S5-1 307 100% 0 0

Chromosomal Locations for CCDS 12551.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 40223052 40223303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40223388 40223546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40224488 40224643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40224722 40224811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40226375 40226641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (924 nt):
ATGCTGGTGAGAGGCAGGGACCAGGGGTCCGGCTCCCGGCTCGGGCCTATCGTTAGGCGCTGGGCCCCCA
GGCCCTCTCCTTTGCAGAGTCTCGCTGCCTCCCTCGACGCAGAGCCTTCAAGCGCCGCAGTCCCCGACGG
CTTCCCCGCGGGCCCCACTGTCTCCCCAAGACGCCTGGCGAGGCCGCCGGGGCTGGAGGAGGCGCTGAGC
GCGCTGGGGCTGCAGGGAGAACGCGAGTACGCCGGGGACATCTTCGCCGAAGTCATGGTGTGCCGCGTGC
TGCCCCTGAGAGCCCTGCCCCGCGCTGTGACCCCGGAGATGCGCGCCCTGGTGGTAGACTGGCTGGTCCA
GGTGCACGAGTACCTGGGTCTGGCTGGTGACACACTTTATCTGGCGGTTCACCTGCTTGATTCCTACCTG
AGCGCTGGCCGCGTGCGTCTACATCGCCTGCAGCTGCTGGGCGTGGCTTGCCTGTTTGTGGCGTGCAAAA
TGGAAGAGTGCGTGCTTCCCGAGCCCGCCTTCCTCTGCCTCCTGAGCGCGGACTCCTTCTCACGGGCGGA
GCTGCTGCGCGCCGAGCGTCGCATCCTGAGCCGCCTGGATTTCCGGCTGCACCACCCCGGCCCGCTGCTG
TGCCTCGGGCTGCTGGCCGCGCTGGCAGGGAGCAGCCCCCAGGTGATGTTACTTGCCACCTACTTCCTGG
AGCTGTCTTTGCTGGAGGCCGAGGCGGCGGGATGGGAGCCGGGTCGTCGTGCGGCTGCGGCTCTGAGCCT
GGCGCACCGCTTGCTCGACGGGGCGGGCTCCAGGCTCCAGCCAGAACTTTACAGGTGTAGTCTTGGCGGA
GGAAGTGTATGGGGTCACCGCAGCTTCAGGGACTTACCTTCCTGGTCATTTTTACGGTCTCGGAGAATGA
GAGACAATTATTGA

Translation (307 aa):
MLVRGRDQGSGSRLGPIVRRWAPRPSPLQSLAASLDAEPSSAAVPDGFPAGPTVSPRRLARPPGLEEALS
ALGLQGEREYAGDIFAEVMVCRVLPLRALPRAVTPEMRALVVDWLVQVHEYLGLAGDTLYLAVHLLDSYL
SAGRVRLHRLQLLGVACLFVACKMEECVLPEPAFLCLLSADSFSRAELLRAERRILSRLDFRLHHPGPLL
CLGLLAALAGSSPQVMLLATYFLELSLLEAEAAGWEPGRRAAAALSLAHRLLDGAGSRLQPELYRCSLGG
GSVWGHRSFRDLPSWSFLRSRRMRDNY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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