NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS12555.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12555.1 Public Homo sapiens 19 HIPK4 24 110 108 CCDS HistoryNCBI Gene:147746Re-query CCDS DB by CCDS ID:12555.1Re-query CCDS DB by GeneID:147746See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12555.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000291823.3 ENSP00000291823.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000291823.3Link to Ensembl Protein Viewer:ENSP00000291823.1Re-query CCDS DB by Nucleotide ID:ENST00000291823Re-query CCDS DB by Protein ID:ENSP00000291823
Original member Current member NCBI NM_144685.5 NP_653286.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144685.5Link to Protein Sequence:NP_653286.2Re-query CCDS DB by Nucleotide ID:NM_144685Re-query CCDS DB by Protein ID:NP_653286Link to BLAST:NP_653286.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653286.2 616 Q8NE63 616 100% 0 0

Chromosomal Locations for CCDS 12555.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 40379587 40379769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40380323 40381168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40383783 40384139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40389438 40389902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1851 nt):
ATGTCCACCATCCAGTCGGAGACTGACTGCTACGACATCATCGAGGTCTTGGGCAAGGGGACCTTCGGGG
AGGTAGCCAAGGGCTGGCGGCGGAGCACGGGCGAGATGGTGGCCATCAAGATCCTCAAGAATGACGCCTA
CCGCAACCGCATCATCAAGAACGAGCTGAAGCTGCTGCACTGCATGCGAGGCCTAGACCCTGAAGAGGCC
CACGTCATCCGCTTCCTTGAGTTCTTCCATGACGCCCTCAAGTTCTACCTGGTCTTTGAGCTGCTGGAGC
AAAACCTTTTCGAGTTCCAGAAGGAGAACAACTTCGCGCCCCTCCCCGCCCGCCACATCCGTACAGTCAC
CCTGCAGGTGCTCACAGCCCTGGCCCGGCTCAAGGAGCTGGCTATCATCCACGCTGATCTCAAGCCTGAG
AACATCATGCTGGTGGACCAGACCCGCTGCCCCTTCAGGGTCAAGGTGATTGACTTCGGATCCGCCAGCA
TTTTCAGCGAGGTGCGCTACGTGAAGGAGCCATACATCCAGTCGCGCTTCTACCGGGCCCCTGAGATCCT
GCTGGGGCTGCCCTTCTGCGAGAAGGTGGACGTGTGGTCCCTGGGCTGCGTCATGGCTGAGCTGCACCTG
GGCTGGCCTCTCTACCCCGGCAACAACGAGTACGACCAGGTGCGCTACATCTGCGAAACCCAGGGCCTGC
CCAAGCCACACCTGTTGCACGCCGCCTGCAAGGCCCACCACTTCTTCAAGCGCAACCCCCACCCTGACGC
TGCCAACCCCTGGCAGCTCAAGTCCTCGGCTGACTACCTGGCCGAGACGAAGGTGCGCCCATTGGAGCGC
CGCAAGTATATGCTCAAGTCGTTGGACCAGATTGAGACAGTGAATGGTGGCAGTGTGGCCAGTCGGCTAA
CCTTCCCTGACCGGGAGGCGCTGGCGGAGCACGCCGACCTCAAGAGCATGGTGGAGCTGATCAAGCGCAT
GCTGACCTGGGAGTCACACGAACGCATCAGCCCCAGTGCTGCCCTGCGCCACCCCTTCGTGTCCATGCAG
CAGCTGCGCAGTGCCCACGAGACCACCCACTACTACCAGCTCTCGCTGCGCAGCTACCGCCTCTCGCTGC
AAGTGGAGGGGAAGCCCCCCACGCCCGTCGTGGCCGCAGAAGATGGGACCCCCTACTACTGTCTGGCTGA
GGAGAAGGAGGCTGCGGGTATGGGCAGTGTGGCCGGCAGCAGCCCCTTCTTCCGAGAGGAGAAGGCACCA
GGTATGCAAAGAGCCATCGACCAGCTGGATGACCTGAGTCTGCAGGAGGCTGGGCATGGGCTGTGGGGTG
AGACCTGCACCAATGCGGTCTCCGACATGATGGTCCCCCTCAAGGCAGCCATCACTGGCCACCATGTGCC
CGACTCGGGCCCTGAGCCCATCCTGGCCTTCTACAGCAGCCGCCTGGCAGGCCGCCACAAGGCCCGCAAG
CCACCTGCGGGTTCCAAGTCCGACTCCAACTTCAGCAACCTCATTCGGCTGAGCCAGGTCTCGCCTGAGG
ATGACAGGCCCTGCCGGGGCAGCAGCTGGGAGGAAGGAGAGCATCTCGGGGCCTCTGCTGAGCCACTGGC
CATCCTGCAGCGAGATGAGGATGGGCCCAACATTGACAACATGACCATGGAAGCTGAGAGGCCAGACCCT
GAGCTCTTCGACCCCAGCAGCTGTCCTGGAGAATGGCTGAGTGAGCCAGACTGCACCCTGGAGAGCGTCA
GGGGCCCACGGGCTCAGGGGCTCCCACCCCGCCGCTCCCACCAGCATGGTCCACCCCGGGGGGCCACCAG
CTTCCTCCAGCATGTCACCGGGCACCACTGA

Translation (616 aa):
MSTIQSETDCYDIIEVLGKGTFGEVAKGWRRSTGEMVAIKILKNDAYRNRIIKNELKLLHCMRGLDPEEA
HVIRFLEFFHDALKFYLVFELLEQNLFEFQKENNFAPLPARHIRTVTLQVLTALARLKELAIIHADLKPE
NIMLVDQTRCPFRVKVIDFGSASIFSEVRYVKEPYIQSRFYRAPEILLGLPFCEKVDVWSLGCVMAELHL
GWPLYPGNNEYDQVRYICETQGLPKPHLLHAACKAHHFFKRNPHPDAANPWQLKSSADYLAETKVRPLER
RKYMLKSLDQIETVNGGSVASRLTFPDREALAEHADLKSMVELIKRMLTWESHERISPSAALRHPFVSMQ
QLRSAHETTHYYQLSLRSYRLSLQVEGKPPTPVVAAEDGTPYYCLAEEKEAAGMGSVAGSSPFFREEKAP
GMQRAIDQLDDLSLQEAGHGLWGETCTNAVSDMMVPLKAAITGHHVPDSGPEPILAFYSSRLAGRHKARK
PPAGSKSDSNFSNLIRLSQVSPEDDRPCRGSSWEEGEHLGASAEPLAILQRDEDGPNIDNMTMEAERPDP
ELFDPSSCPGEWLSEPDCTLESVRGPRAQGLPPRRSHQHGPPRGATSFLQHVTGHH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH