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Report for CCDS12576.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12576.1 Public Homo sapiens 19 HNRNPUL1 24 110 108 CCDS HistoryNCBI Gene:11100Re-query CCDS DB by CCDS ID:12576.1Re-query CCDS DB by GeneID:11100See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12576.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000392006.8 ENSP00000375863.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000392006.8Link to Ensembl Protein Viewer:ENSP00000375863.2Re-query CCDS DB by Nucleotide ID:ENST00000392006Re-query CCDS DB by Protein ID:ENSP00000375863
Original member Current member NCBI NM_007040.6 NP_008971.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_007040.6Link to Protein Sequence:NP_008971.2Re-query CCDS DB by Nucleotide ID:NM_007040Re-query CCDS DB by Protein ID:NP_008971Link to BLAST:NP_008971.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_008971.2 856 Q9BUJ2-1 856 100% 0 0

Chromosomal Locations for CCDS 12576.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 41264504 41264798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41268223 41268345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41272082 41272235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41273982 41274055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41276159 41276298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41279077 41279176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41281163 41281275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41292245 41292511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41294338 41294460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41294558 41294686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41301536 41301704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41302665 41302949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41303972 41304261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41305676 41305867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41306449 41306565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2571 nt):
ATGGATGTGCGCCGTCTGAAGGTGAACGAACTTCGCGAGGAGCTGCAGCGCCGCGGCCTGGACACTCGAG
GCCTCAAGGCCGAGCTTGCTGAGCGGCTGCAGGCGGCGTTGGAGGCCGAGGAGCCTGACGACGAGCGGGA
GCTCGACGCCGACGACGAACCGGGGCGACCCGGGCACATCAACGAGGAGGTCGAGACCGAGGGGGGCTCC
GAGCTGGAGGGGACCGCGCAGCCACCGCCGCCCGGGCTGCAGCCGCACGCGGAGCCCGGCGGCTACTCGG
GGCCGGACGGACATTATGCCATGGACAATATTACCAGGCAGAACCAATTCTACGATACCCAAGTCATCAA
ACAAGAAAACGAGTCAGGCTACGAGAGGAGACCACTGGAAATGGAGCAGCAGCAGGCCTATCGTCCAGAA
ATGAAGACAGAGATGAAGCAAGGAGCACCCACCAGCTTCCTCCCGCCTGAAGCTTCTCAACTCAAGCCAG
ACAGGCAGCAATTCCAGAGTCGAAAGAGGCCTTATGAAGAAAACCGGGGACGGGGGTACTTTGAGCACCG
AGAGGATAGGAGGGGCCGCTCTCCTCAGCCTCCTGCTGAAGAGGATGAAGATGACTTTGATGATACCCTT
GTTGCTATTGACACCTATAACTGCGACCTCCACTTCAAGGTGGCCCGAGATCGGAGTAGTGGCTATCCGC
TCACAATTGAGGGCTTTGCATACCTGTGGTCAGGAGCCCGTGCCAGCTATGGGGTCAGAAGGGGCCGTGT
ATGCTTCGAGATGAAGATCAATGAGGAAATCTCCGTGAAGCACCTTCCGTCTACAGAGCCTGACCCCCAC
GTGGTCCGTATCGGCTGGTCCCTGGACTCCTGCAGCACCCAGCTAGGCGAAGAGCCTTTCTCCTATGGCT
ATGGAGGCACTGGGAAGAAGTCCACCAATAGCCGGTTTGAAAACTACGGAGACAAGTTTGCAGAGAACGA
TGTGATTGGCTGCTTTGCGGATTTTGAATGTGGAAATGACGTGGAACTGTCTTTTACCAAGAATGGAAAG
TGGATGGGCATTGCTTTCCGAATCCAGAAGGAAGCCTTGGGGGGTCAGGCCCTCTATCCTCATGTCCTGG
TGAAGAATTGCGCAGTGGAGTTCAACTTCGGACAGAGAGCAGAGCCCTACTGTTCTGTCCTCCCGGGGTT
TACCTTCATCCAGCACCTTCCCCTTAGTGAGCGTATCCGGGGCACCGTTGGACCAAAGAGCAAGGCAGAA
TGTGAGATTCTGATGATGGTGGGCCTGCCTGCTGCTGGCAAGACCACATGGGCCATCAAACATGCAGCCT
CCAACCCTTCCAAGAAGTACAACATCCTGGGTACCAATGCCATCATGGATAAGATGCGGGTGATGGGCCT
ACGCCGGCAGCGGAACTATGCTGGCCGCTGGGATGTCCTGATCCAGCAGGCCACCCAGTGCCTCAACCGC
CTCATCCAGATTGCTGCCCGCAAGAAACGCAACTATATCCTAGATCAGACAAATGTTTATGGGTCAGCCC
AGAGACGAAAAATGAGACCATTTGAAGGCTTCCAGCGCAAAGCTATTGTAATTTGTCCCACTGACGAGGA
CCTAAAAGACCGAACAATAAAGCGAACCGACGAGGAAGGGAAGGATGTCCCAGATCATGCGGTCTTAGAA
ATGAAAGCCAACTTCACGTTGCCAGATGTTGGGGACTTCCTGGATGAGGTTCTGTTCATTGAGCTGCAGC
GGGAGGAAGCGGACAAGCTAGTGAGGCAGTACAACGAGGAAGGCCGCAAGGCTGGGCCACCCCCTGAAAA
GCGCTTTGACAACCGAGGTGGTGGTGGCTTCCGGGGCCGCGGGGGTGGTGGTGGCTTCCAGCGCTATGAA
AACCGAGGACCCCCTGGAGGCAACCGTGGCGGCTTCCAGAACCGAGGGGGAGGCAGCGGTGGAGGAGGCA
ACTACCGAGGAGGTTTCAACCGCAGCGGAGGTGGTGGCTATAGCCAGAACCGCTGGGGTAACAACAACCG
GGATAACAACAACTCCAACAACAGAGGCAGCTACAACCGGGCTCCCCAGCAACAGCCGCCACCACAGCAG
CCTCCGCCACCACAGCCACCACCCCAGCAGCCACCGCCACCACCCAGCTACAGCCCTGCTCGGAACCCCC
CAGGGGCCAGCACCTACAATAAGAACAGCAACATCCCTGGCTCAAGCGCCAATACCAGCACCCCCACCGT
CAGCAGCTACAGCCCTCCACAGCCGAGTTACAGCCAGCCACCCTACAACCAGGGAGGTTACAGCCAGGGC
TACACAGCCCCACCGCCTCCACCTCCACCACCACCTGCCTACAACTATGGGAGCTACGGCGGTTACAACC
CGGCCCCCTATACCCCACCGCCACCCCCCACTGCACAGACCTACCCTCAGCCCAGCTATAACCAGTATCA
GCAGTATGCCCAGCAGTGGAACCAGTACTATCAGAACCAGGGCCAGTGGCCGCCATACTACGGGAACTAC
GACTACGGGAGCTACTCCGGGAACACACAGGGTGGCACAAGTACACAGTAG

Translation (856 aa):
MDVRRLKVNELREELQRRGLDTRGLKAELAERLQAALEAEEPDDERELDADDEPGRPGHINEEVETEGGS
ELEGTAQPPPPGLQPHAEPGGYSGPDGHYAMDNITRQNQFYDTQVIKQENESGYERRPLEMEQQQAYRPE
MKTEMKQGAPTSFLPPEASQLKPDRQQFQSRKRPYEENRGRGYFEHREDRRGRSPQPPAEEDEDDFDDTL
VAIDTYNCDLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDPH
VVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFADFECGNDVELSFTKNGK
WMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFTFIQHLPLSERIRGTVGPKSKAE
CEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNR
LIQIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPTDEDLKDRTIKRTDEEGKDVPDHAVLE
MKANFTLPDVGDFLDEVLFIELQREEADKLVRQYNEEGRKAGPPPEKRFDNRGGGGFRGRGGGGGFQRYE
NRGPPGGNRGGFQNRGGGSGGGGNYRGGFNRSGGGGYSQNRWGNNNRDNNNSNNRGSYNRAPQQQPPPQQ
PPPPQPPPQQPPPPPSYSPARNPPGASTYNKNSNIPGSSANTSTPTVSSYSPPQPSYSQPPYNQGGYSQG
YTAPPPPPPPPPAYNYGSYGGYNPAPYTPPPPPTAQTYPQPSYNQYQQYAQQWNQYYQNQGQWPPYYGNY
DYGSYSGNTQGGTSTQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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