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Report for CCDS12617.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12617.1 Public Homo sapiens 19 PSG5 24 110 108 CCDS HistoryNCBI Gene:5673Re-query CCDS DB by CCDS ID:12617.1Re-query CCDS DB by GeneID:5673See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12617.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000342951.11 ENSP00000344413.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000342951.11Link to Ensembl Protein Viewer:ENSP00000344413.6Re-query CCDS DB by Nucleotide ID:ENST00000342951Re-query CCDS DB by Protein ID:ENSP00000344413
Original member Current member EBI ENST00000366175.7 ENSP00000382334.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000366175.7Link to Ensembl Protein Viewer:ENSP00000382334.2Re-query CCDS DB by Nucleotide ID:ENST00000366175Re-query CCDS DB by Protein ID:ENSP00000382334
Original member Current member EBI ENST00000407356.5 ENSP00000386008.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000407356.5Link to Ensembl Protein Viewer:ENSP00000386008.1Re-query CCDS DB by Nucleotide ID:ENST00000407356Re-query CCDS DB by Protein ID:ENSP00000386008
Original member Current member NCBI NM_001130014.2 NP_001123486.1 Accepted alive Link to Nucleotide Sequence:NM_001130014.2Link to Protein Sequence:NP_001123486.1Re-query CCDS DB by Nucleotide ID:NM_001130014Re-query CCDS DB by Protein ID:NP_001123486Link to BLAST:NP_001123486.1
Original member Current member NCBI NM_002781.4 NP_002772.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002781.4Link to Protein Sequence:NP_002772.3Re-query CCDS DB by Nucleotide ID:NM_002781Re-query CCDS DB by Protein ID:NP_002772Link to BLAST:NP_002772.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001123486.1 335 Q15238 335 100% 0 0
NP_002772.3 335 Q15238 335 100% 0 0

Chromosomal Locations for CCDS 12617.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 43170095 43170138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43175215 43175469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43175870 43176148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43184782 43185147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43186342 43186405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1008 nt):
ATGGGGCCCCTCTCAGCCCCTCCCTGCACACAGCACATCACCTGGAAGGGGCTCCTGCTCACAGCATCAC
TTTTAAACTTCTGGAACCTGCCTATCACTGCTCAAGTCACGATTGAAGCCCTGCCACCCAAAGTTTCCGA
GGGGAAGGATGTTCTTCTACTTGTCCACAATTTGCCTCAGAATCTTGCTGGCTACATCTGGTACAAAGGA
CAACTGATGGACCTCTACCATTACATTACATCATATGTAGTAGACGGTCAAATAAATATATATGGGCCTG
CATACACTGGACGAGAAACAGTATATTCCAATGCATCCCTGCTGATCCAGAATGTCACCCGGGAAGACGC
AGGATCCTACACCTTACACATCATAAAGCGAGGTGATAGGACTAGAGGAGTAACTGGATATTTCACCTTC
AACTTATACCTGAAGCTGCCCAAGCCCTACATCACCATCAACAACTCAAAACCCAGGGAGAATAAGGATG
TCTTAGCCTTCACCTGTGAACCTAAGAGTGAGAACTACACCTACATTTGGTGGCTAAATGGTCAGAGCCT
CCCGGTCAGTCCCAGGGTAAAGCGACCCATTGAAAACAGGATCCTCATTCTACCCAGTGTCACGAGAAAT
GAAACAGGACCCTATGAATGTGAAATACGGGACCGAGATGGTGGCATGCGCAGTGACCCAGTCACCCTGA
ATGTCCTCTATGGTCCAGACCTCCCCAGCATTTACCCTTCATTCACCTATTACCGTTCAGGAGAAAACCT
CTACTTGTCCTGCTTCGCGGAATCTAACCCACCGGCAGAGTATTTTTGGACAATTAATGGGAAGTTTCAG
CAATCAGGACAAAAGCTCTCTATCCCCCAAATTACTACAAAGCATAGAGGGCTCTATACTTGCTCTGTTC
GTAACTCAGCTACTGGCAAGGAAAGCTCCAAATCCATGACAGTCGAAGTCTCTGCTCCTTCAGGAATAGG
ACGTCTTCCTCTCCTTAATCCAATATAG

Translation (335 aa):
MGPLSAPPCTQHITWKGLLLTASLLNFWNLPITAQVTIEALPPKVSEGKDVLLLVHNLPQNLAGYIWYKG
QLMDLYHYITSYVVDGQINIYGPAYTGRETVYSNASLLIQNVTREDAGSYTLHIIKRGDRTRGVTGYFTF
NLYLKLPKPYITINNSKPRENKDVLAFTCEPKSENYTYIWWLNGQSLPVSPRVKRPIENRILILPSVTRN
ETGPYECEIRDRDGGMRSDPVTLNVLYGPDLPSIYPSFTYYRSGENLYLSCFAESNPPAEYFWTINGKFQ
QSGQKLSIPQITTKHRGLYTCSVRNSATGKESSKSMTVEVSAPSGIGRLPLLNPI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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