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Report for CCDS12629.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12629.1 Public Homo sapiens 19 IRGC 24 110 108 CCDS HistoryNCBI Gene:56269Re-query CCDS DB by CCDS ID:12629.1Re-query CCDS DB by GeneID:56269See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12629.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000244314.6 ENSP00000244314.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000244314.6Link to Ensembl Protein Viewer:ENSP00000244314.5Re-query CCDS DB by Nucleotide ID:ENST00000244314Re-query CCDS DB by Protein ID:ENSP00000244314
Original member Current member NCBI NM_019612.4 NP_062558.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_019612.4Link to Protein Sequence:NP_062558.1Re-query CCDS DB by Nucleotide ID:NM_019612Re-query CCDS DB by Protein ID:NP_062558Link to BLAST:NP_062558.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062558.1 463 Q6NXR0 463 100% 0 0

Chromosomal Locations for CCDS 12629.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 43718559 43719950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1392 nt):
ATGGCTACTTCAAAGTTGCCCGTGGTGCCTGGGGAGGAGGAAAACACCATCCTTATGGCCAAGGAAAGGC
TGGAGGCCCTGCGCACAGCCTTTGAGTCGGGTGACCTCCCCCAGGCCGCCTCTCACCTCCAGGAGCTGCT
GGCCTCCACGGAAAGCATCCGCCTGGAGGTGGGCGTCACGGGCGAGTCGGGCGCGGGCAAGTCCTCCCTC
ATCAATGCCCTGCGTGGCCTGGAGGCCGAGGACCCTGGCGCGGCTCTCACGGGCGTCATGGAGACCACGA
TGCAACCGTCGCCCTATCCACACCCACAGTTCCCTGACGTGACCCTCTGGGACCTGCCAGGAGCCGGCTC
TCCAGGCTGCCCGGCTGACAAGTACCTAAAGCAGGTAGACTTCAGCCGCTATGACTTCTTCCTGCTGGTC
TCCCCCCGCCGCTGCGGGGCCGTCGAGACCCGCCTGGCCGCTGAGATCCTGTGCCAGGGCAAGAAGTTCT
ACTTTGTGCGCACCAAGGTGGACGAGGACCTGGCGGCCACGCGCACCCAGCGGCCGTCGGGCTTCAGAGA
GGCCGCTGTCCTGCAGGAGATCCGAGACCACTGTGCCGAGCGGCTGCGGGAGGCCGGCGTGGCTGACCCT
CGCATCTTCCTGGTGTCCAACCTCTCGCCGGCCCGCTACGACTTTCCCACGCTGGTGTCCACCTGGGAGC
ACGACCTGCCCTCCCACCGGCGCCACGCTGGCCTGCTGTCGCTCCCCGACATCTCGCTGGAGGCCTTGCA
GAAGAAGAAGGCCATGCTTCAAGAGCAAGTCCTCAAGACCGCCCTGGTGTTGGGCGTCATCCAGGCCCTG
CCGGTCCCAGGGCTGGCGGCCGCCTACGATGATGCGTTGCTCATCCACTCACTGCGTGGCTACCACCGCA
GCTTTGGTCTGGACGACGACTCGCTGGCCAAGCTGGCCGAGCAGGTGGGCAAACAGGCAGGTGACCTGCG
CTCGGTCATCCGCTCCCCACTGGCCAACGAGGTCTCGCCTGAGACTGTCCTGCGGCTCTATTCCCAGTCG
TCCGACGGCGCCATGCGGGTGGCCCGCGCCTTTGAGAGGGGCATCCCTGTGTTTGGGACGCTGGTGGCTG
GCGGCATCAGCTTTGGCGCTGTCTACACCATGCTCCAGGGCTGCCTCAACGAGATGGCTGAGGACGCCCA
GCGTGTCCGCATCAAGGCCCTGGAGGATGACGAGCCGCAGCCGGAGGTCAGCTTGGAAGTGGCCAGTGAC
AATGGCGTGGAAAAGGGGGGCTCCGGGGAGGGAGGTGGGGAGGAAGCCCCACTCTCAACCTGCAGGAAGC
TCGGCCTCCTTCTTAAGTACATTCTGGACAGCTGGAAGAAACACGACTCAGAAGAGAAATAA

Translation (463 aa):
MATSKLPVVPGEEENTILMAKERLEALRTAFESGDLPQAASHLQELLASTESIRLEVGVTGESGAGKSSL
INALRGLEAEDPGAALTGVMETTMQPSPYPHPQFPDVTLWDLPGAGSPGCPADKYLKQVDFSRYDFFLLV
SPRRCGAVETRLAAEILCQGKKFYFVRTKVDEDLAATRTQRPSGFREAAVLQEIRDHCAERLREAGVADP
RIFLVSNLSPARYDFPTLVSTWEHDLPSHRRHAGLLSLPDISLEALQKKKAMLQEQVLKTALVLGVIQAL
PVPGLAAAYDDALLIHSLRGYHRSFGLDDDSLAKLAEQVGKQAGDLRSVIRSPLANEVSPETVLRLYSQS
SDGAMRVARAFERGIPVFGTLVAGGISFGAVYTMLQGCLNEMAEDAQRVRIKALEDDEPQPEVSLEVASD
NGVEKGGSGEGGGEEAPLSTCRKLGLLLKYILDSWKKHDSEEK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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