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Report for CCDS12675.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12675.1 Public Homo sapiens 19 RSPH6A 24 110 108 CCDS HistoryNCBI Gene:81492Re-query CCDS DB by CCDS ID:12675.1Re-query CCDS DB by GeneID:81492See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12675.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000221538.8 ENSP00000221538.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000221538.8Link to Ensembl Protein Viewer:ENSP00000221538.2Re-query CCDS DB by Nucleotide ID:ENST00000221538Re-query CCDS DB by Protein ID:ENSP00000221538
Original member Current member NCBI NM_030785.4 NP_110412.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030785.4Link to Protein Sequence:NP_110412.1Re-query CCDS DB by Nucleotide ID:NM_030785Re-query CCDS DB by Protein ID:NP_110412Link to BLAST:NP_110412.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_110412.1 717 Q9H0K4 717 100% 0 0

Chromosomal Locations for CCDS 12675.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 45795869 45796106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45800446 45800563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45802120 45802264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45804252 45805016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45810603 45810840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45814527 45815176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2154 nt):
ATGGGAGACCTGCCGCCCTACCCTGAGCGCCCTGCCCAGCAGCCTCCGGGCCGGAGGACTTCTCAGGCCT
CCCAGAGGCGGCACAGTCGGGACCAAGCTCAGGCCCTGGCAGCGGACCCCGAGGAGAGGCAGCAGATACC
TCCAGACGCCCAGCGAAACGCCCCTGGTTGGTCACAGAGGGGCAGCCTGTCCCAACAGGAGAACTTGCTG
ATGCCCCAGGTCTTCCAGGCTGAGGAAGCCCGGCTGGGTGGCATGGAGTACCCATCTGTGAACACGGGCT
TTCCCTCAGAGTTCCAGCCTCAGCCTTACTCTGATGAAAGCAGGATGCAGGTCGCCGAGCTCACCACCAG
CCTAATGCTGCAGCGGCTCCAGCAGGGCCAAAGCAGCCTGTTCCAGCAACTGGACCCCACCTTCCAGGAG
CCCCCAGTCAACCCCTTGGGCCAGTTCAACCTCTACCAGACAGACCAGTTCTCTGAAGGTGCCCAGCACG
GGCCTTACATAAGGGATGACCCTGCCCTTCAGTTCTTGCCCTCTGAGCTGGGCTTCCCACACTACAGTGC
CCAGGTGCCTGAGCCCGAGCCTCTGGAGCTGGCCGTGCAGAACGCCAAGGCCTACCTGCTGCAGACCAGC
ATCAATTGCGACCTCAGCCTGTACGAGCACCTGGTGAATCTGCTGACCAAGATCCTGAACCAGCGGCCTG
AGGACCCCTTGTCTGTCCTGGAGTCTCTGAACCGCACCACGCAGTGGGAGTGGTTCCACCCCAAGCTGGA
CACGCTGCGGGACGACCCCGAGATGCAGCCCACCTACAAGATGGCGGAGAAACAGAAGGCGCTGTTCACC
CGGAGTGGAGGCGGCACTGAAGGCGAACAGGAGATGGAGGAGGAGGTGGGGGAGACACCAGTGCCCAACA
TCATGGAGACTGCCTTCTACTTCGAGCAGGCCGGCGTCGGCCTGAGCTCGGACGAGAGCTTCCGCATTTT
CCTGGCCATGAAACAGCTGGTGGAGCAGCAGCCCATCCACACCTGTCGCTTCTGGGGCAAGATCCTGGGA
ATCAAACGCAGCTACCTGGTGGCCGAGGTGGAATTCCGGGAGGGCGAGGAGGAGGCAGAGGAGGAGGAGG
TGGAGGAGATGACGGAAGGTGGCGAGGTCATGGAGGCGCACGGCGAGGAGGAGGGCGAGGAGGACGAGGA
GAAGGCCGTGGACATCGTCCCTAAGTCCGTATGGAAGCCGCCGCCCGTGATCCCCAAGGAGGAGAGCCGC
TCAGGCGCCAACAAGTACCTGTACTTTGTGTGCAACGAGCCGGGCCTGCCATGGACGCGGCTGCCCCACG
TCACTCCAGCCCAGATCGTGAACGCCCGAAAGATCAAGAAGTTCTTCACAGGCTACCTGGACACGCCAGT
CGTCAGCTACCCACCCTTCCCGGGCAACGAGGCCAACTACCTGCGGGCCCAGATAGCCCGCATCTCGGCC
GCCACGCAGGTCAGCCCGCTGGGCTTCTACCAGTTTAGTGAGGAGGAGGGCGACGAGGAGGAGGAAGGTG
GTGCTGGGCGCGACTCCTACGAGGAGAACCCGGACTTCGAGGGCATCCCCGTGCTGGAGCTGGTCGACTC
CATGGCCAACTGGGTGCATCACACACAGCACATCCTGCCGCAGGGCCGCTGCACTTGGGTGAACCCTTTG
CAGAAGACAGAGGAGGAGGAGGACCTGGGGGAGGAGGAAGAGAAGGCAGATGAGGGGCCAGAGGAGGTGG
AGCAGGAGGTTGGCCCCCCACTGCTAACGCCACTTTCAGAAGATGCAGAAATCATGCACCTGGCACCCTG
GACCACCCGCCTGTCCTGCAGCCTCTGCCCGCAGTACTCAGTGGCCGTTGTGCGCTCCAACCTCTGGCCC
GGGGCCTATGCCTATGCCAGTGGCAAAAAGTTTGAGAACATCTACATCGGCTGGGGTCACAAGTACAGCC
CCGAGAGCTTCAACCCGGCCCTGCCAGCCCCCATTCAACAAGAGTACCCCAGTGGCCCAGAGATCATGGA
GATGAGTGACCCCACAGTGGAAGAGGAGCAGGCTCTGAAAGCAGCCCAGGAACAAGCCCTGGGAGCCACA
GAGGAGGAGGAGGAGGGCGAGGAGGAGGAGGAGGGCGAGGAGACAGATGACTGA

Translation (717 aa):
MGDLPPYPERPAQQPPGRRTSQASQRRHSRDQAQALAADPEERQQIPPDAQRNAPGWSQRGSLSQQENLL
MPQVFQAEEARLGGMEYPSVNTGFPSEFQPQPYSDESRMQVAELTTSLMLQRLQQGQSSLFQQLDPTFQE
PPVNPLGQFNLYQTDQFSEGAQHGPYIRDDPALQFLPSELGFPHYSAQVPEPEPLELAVQNAKAYLLQTS
INCDLSLYEHLVNLLTKILNQRPEDPLSVLESLNRTTQWEWFHPKLDTLRDDPEMQPTYKMAEKQKALFT
RSGGGTEGEQEMEEEVGETPVPNIMETAFYFEQAGVGLSSDESFRIFLAMKQLVEQQPIHTCRFWGKILG
IKRSYLVAEVEFREGEEEAEEEEVEEMTEGGEVMEAHGEEEGEEDEEKAVDIVPKSVWKPPPVIPKEESR
SGANKYLYFVCNEPGLPWTRLPHVTPAQIVNARKIKKFFTGYLDTPVVSYPPFPGNEANYLRAQIARISA
ATQVSPLGFYQFSEEEGDEEEEGGAGRDSYEENPDFEGIPVLELVDSMANWVHHTQHILPQGRCTWVNPL
QKTEEEEDLGEEEEKADEGPEEVEQEVGPPLLTPLSEDAEIMHLAPWTTRLSCSLCPQYSVAVVRSNLWP
GAYAYASGKKFENIYIGWGHKYSPESFNPALPAPIQQEYPSGPEIMEMSDPTVEEEQALKAAQEQALGAT
EEEEEGEEEEEGEETDD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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