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Report for CCDS12710.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12710.1 Public Homo sapiens 19 PLA2G4C 24 110 108 CCDS HistoryNCBI Gene:8605Re-query CCDS DB by CCDS ID:12710.1Re-query CCDS DB by GeneID:8605See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12710.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000599921.6 ENSP00000469473.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000599921.6Link to Ensembl Protein Viewer:ENSP00000469473.1Re-query CCDS DB by Nucleotide ID:ENST00000599921Re-query CCDS DB by Protein ID:ENSP00000469473
Original member Current member NCBI NM_003706.3 NP_003697.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003706.3Link to Protein Sequence:NP_003697.2Re-query CCDS DB by Nucleotide ID:NM_003706Re-query CCDS DB by Protein ID:NP_003697Link to BLAST:NP_003697.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003697.2 541 Q9UP65-1 541 100% 0 0

Chromosomal Locations for CCDS 12710.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 48048343 48048388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48052997 48053147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48054878 48055049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48061998 48062152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48067791 48067886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48074767 48074874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48077771 48077824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48085059 48085112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48088686 48088712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48090364 48090417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48095464 48095604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48098139 48098259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48099671 48099860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48104588 48104724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48105333 48105444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48106522 48106529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1626 nt):
ATGGGAAGCTCTGAAGTTTCCATAATTCCTGGGCTCCAGAAAGAAGAAAAGGCGGCCGTGGAGAGACGAA
GACTTCATGTGCTGAAAGCTCTGAAGAAGCTAAGGATTGAGGCTGATGAGGCCCCAGTTGTTGCTGTGCT
GGGCTCAGGCGGAGGACTGCGGGCTCACATTGCCTGCCTTGGGGTCCTGAGTGAGATGAAAGAACAGGGC
CTGTTGGATGCCGTCACGTACCTCGCAGGGGTCTCTGGATCCACTTGGGCAATATCTTCTCTCTACACCA
ATGATGGTGACATGGAAGCTCTCGAGGCTGACCTGAAACATCGATTTACCCGACAGGAGTGGGACTTGGC
TAAGAGCCTACAGAAAACCATCCAAGCAGCGAGGTCTGAGAATTACTCTCTGACCGACTTCTGGGCCTAC
ATGGTTATCTCTAAGCAAACCAGAGAACTGCCGGAGTCTCATTTGTCCAATATGAAGAAGCCCGTGGAAG
AAGGGACACTACCCTACCCAATATTTGCAGCCATTGACAATGACCTGCAACCTTCCTGGCAGGAGGCAAG
AGCACCAGAGACCTGGTTCGAGTTCACCCCTCACCACGCTGGCTTCTCTGCACTGGGGGCCTTTGTTTCC
ATAACCCACTTCGGAAGCAAATTCAAGAAGGGAAGACTGGTCAGAACTCACCCTGAGAGAGACCTGACTT
TCCTGAGAGGTTTATGGGGAAGTGCTCTTGGTAACACTGAAGTCATTAGGGAATACATTTTTGACCAGTT
AAGGAATCTGACCCTGAAAGGTTTATGGAGAAGGGCTGTTGCTAATGCTAAAAGCATTGGACACCTTATT
TTTGCCCGATTACTGAGGCTGCAAGAAAGTTCACAAGGGGAACATCCTCCCCCAGAAGATGAAGGCGGTG
AGCCTGAACACACCTGGCTGACTGAGATGCTCGAGAATTGGACCAGGACCTCCCTGGAAAAGCAGGAGCA
GCCCCATGAGGACCCCGAAAGGAAAGGCTCACTCAGTAACTTGATGGATTTTGTGAAGAAAACAGGCATT
TGCGCTTCAAAGTGGGAATGGGGGACCACTCACAACTTCCTGTACAAACACGGTGGCATCCGGGACAAGA
TAATGAGCAGCCGGAAGCACCTCCACCTGGTGGATGCTGGTTTAGCCATCAACACTCCCTTCCCACTCGT
GCTGCCCCCGACGCGGGAGGTTCACCTCATCCTCTCCTTCGACTTCAGTGCCGGAGATCCTTTCGAGACC
ATCCGGGCTACCACTGACTACTGCCGCCGCCACAAGATCCCCTTTCCCCAAGTAGAAGAGGCTGAGCTGG
ATTTGTGGTCCAAGGCCCCCGCCAGCTGCTACATCCTGAAAGGAGAAACTGGACCAGTGGTGATGCATTT
TCCCCTGTTCAACATAGATGCCTGTGGAGGTGATATTGAGGCATGGAGTGACACATACGACACATTCAAG
CTTGCTGACACCTACACTCTAGATGTGGTGGTGCTACTCTTGGCATTAGCCAAGAAGAATGTCAGGGAAA
ACAAGAAGAAGATCCTTAGAGAGTTGATGAACGTGGCCGGGCTCTACTACCCGAAGGATAGTGCCCGAAG
TTGCTGCTTGGCATAG

Translation (541 aa):
MGSSEVSIIPGLQKEEKAAVERRRLHVLKALKKLRIEADEAPVVAVLGSGGGLRAHIACLGVLSEMKEQG
LLDAVTYLAGVSGSTWAISSLYTNDGDMEALEADLKHRFTRQEWDLAKSLQKTIQAARSENYSLTDFWAY
MVISKQTRELPESHLSNMKKPVEEGTLPYPIFAAIDNDLQPSWQEARAPETWFEFTPHHAGFSALGAFVS
ITHFGSKFKKGRLVRTHPERDLTFLRGLWGSALGNTEVIREYIFDQLRNLTLKGLWRRAVANAKSIGHLI
FARLLRLQESSQGEHPPPEDEGGEPEHTWLTEMLENWTRTSLEKQEQPHEDPERKGSLSNLMDFVKKTGI
CASKWEWGTTHNFLYKHGGIRDKIMSSRKHLHLVDAGLAINTPFPLVLPPTREVHLILSFDFSAGDPFET
IRATTDYCRRHKIPFPQVEEAELDLWSKAPASCYILKGETGPVVMHFPLFNIDACGGDIEAWSDTYDTFK
LADTYTLDVVVLLLALAKKNVRENKKKILRELMNVAGLYYPKDSARSCCLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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