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Report for CCDS12785.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12785.1 Public Homo sapiens 19 TBC1D17 24 110 108 CCDS HistoryNCBI Gene:79735Re-query CCDS DB by CCDS ID:12785.1Re-query CCDS DB by GeneID:79735See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12785.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000221543.10 ENSP00000221543.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000221543.10Link to Ensembl Protein Viewer:ENSP00000221543.4Re-query CCDS DB by Nucleotide ID:ENST00000221543Re-query CCDS DB by Protein ID:ENSP00000221543
Original member Current member NCBI NM_024682.3 NP_078958.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024682.3Link to Protein Sequence:NP_078958.2Re-query CCDS DB by Nucleotide ID:NM_024682Re-query CCDS DB by Protein ID:NP_078958Link to BLAST:NP_078958.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_078958.2 648 Q9HA65-1 648 100% 0 0

Chromosomal Locations for CCDS 12785.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 49877724 49877744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49878143 49878241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49878498 49878572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49880279 49880402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49881268 49881475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49882041 49882152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49882242 49882400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49882764 49882892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49882973 49883076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49883651 49883745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49884253 49884369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49884459 49884559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49884659 49884758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49887476 49887573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49887718 49887834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49888231 49888317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49888424 49888624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1947 nt):
ATGGAAGGAGCCGGCTACAGGGTGGTGTTTGAGAAGGGCGGAGTGTACCTGCACACCAGCGCTAAGAAGT
ATCAGGACCGAGACTCTCTCATCGCTGGTGTCATCCGTGTCGTGGAAAAGGACAATGACGTCCTCCTGCA
CTGGGCTCCTGTAGAGGAGGCTGGAGATTCCACCCAAATCCTCTTCTCCAAGAAGGACTCCAGTGGGGGT
GACTCATGTGCTTCTGAGGAGGAACCAACCTTTGACCCCGGCTATGAACCTGACTGGGCTGTCATCAGCA
CTGTGCGGCCACAGCTCTGCCACTCAGAGCCCACGAGAGGTGCAGAGCCCAGCTGCCCCCAGGGCTCCTG
GGCCTTCTCAGTGAGTCTGGGGGAGCTAAAGTCCATCCGCCGCTCCAAGCCAGGCCTCAGCTGGGCCTAC
CTGGTTCTGGTGACCCAGGCTGGAGGTTCCCTGCCCGCACTGCACTTCCACCGCGGGGGCACCCGCGCCC
TGCTCCGCGTCCTCAGCCGCTACCTGCTGTTGGCCAGCTCCCCGCAGGACTCCCGCCTCTACCTTGTCTT
CCCCCACGACTCCTCTGCTCTCTCCAACTCCTTCCACCACCTGCAGCTCTTTGACCAGGACAGCTCCAAT
GTGGTGTCACGCTTCCTCCAGGATCCCTACTCCACCACCTTCAGCAGCTTCTCCCGAGTGACCAACTTCT
TCCGGGGTGCCCTGCAGCCACAGCCTGAGGGAGCCGCCTCCGACCTTCCCCCGCCACCCGACGATGAGCC
CGAGCCTGGATTCGAGGTCATTTCCTGTGTGGAGCTGGGGCCTCGGCCAACCGTGGAGCGGGGCCCTCCA
GTTACAGAGGAGGAGTGGGCACGCCACGTGGGCCCTGAAGGTCGCCTGCAGCAGGTCCCTGAGCTGAAGA
ACCGGATCTTCTCGGGGGGTCTGAGCCCCAGCCTGCGGCGCGAGGCCTGGAAGTTCCTCCTAGGGTACCT
CAGCTGGGAAGGCACAGCTGAGGAGCACAAGGCCCACATACGCAAGAAAACGGATGAGTATTTCCGCATG
AAGCTGCAGTGGAAATCTGTGAGCCCTGAGCAGGAGCGGAGAAACTCACTTCTGCATGGATACCGCAGCC
TCATCGAAAGGGATGTGAGCCGCACTGACAGGACCAACAAGTTCTACGAGGGTCCCGAGAACCCGGGGCT
GGGCCTGCTGAACGATATCCTCCTCACCTACTGCATGTATCACTTCGACCTCGGCTACGTCCAGGGCATG
AGTGATCTTCTCTCCCCGATCCTCTACGTCATTCAGAACGAGGTGGATGCTTTCTGGTGTTTCTGTGGCT
TCATGGAGCTCGTGCAAGGGAACTTTGAAGAGAGCCAGGAGACCATGAAGCGGCAACTCGGGCGACTGCT
GCTGCTCCTGAGGGTGCTGGACCCCCTGCTCTGCGACTTCCTGGATTCCCAGGACTCCGGCTCTCTCTGC
TTCTGTTTCCGGTGGCTGCTCATCTGGTTCAAGAGGGAATTCCCCTTCCCGGATGTCCTTCGGCTGTGGG
AGGTGCTGTGGACAGGGCTCCCTGGCCCCAATCTGCACCTGCTGGTGGCCTGCGCCATCCTGGACATGGA
GAGGGACACCCTCATGCTGTCCGGCTTCGGCTCCAATGAGATCCTCAAGCACATCAACGAGCTGACTATG
AAGCTGAGCGTGGAGGACGTGCTGACCCGCGCCGAGGCCCTGCACCGCCAGCTAACCGCCTGCCCCGAGC
TGCCCCACAACGTGCAGGAGATCCTGGGGCTGGCCCCGCCCGCAGAGCCCCACAGCCCCTCGCCCACCGC
CTCCCCGCTGCCTCTGTCGCCCACCCGGGCCCCGCCCACCCCGCCGCCCTCCACGGACACAGCCCCGCAG
CCCGACAGCAGCCTGGAGATCCTGCCCGAGGAGGAGGACGAGGGCGCCGACTCCTAA

Translation (648 aa):
MEGAGYRVVFEKGGVYLHTSAKKYQDRDSLIAGVIRVVEKDNDVLLHWAPVEEAGDSTQILFSKKDSSGG
DSCASEEEPTFDPGYEPDWAVISTVRPQLCHSEPTRGAEPSCPQGSWAFSVSLGELKSIRRSKPGLSWAY
LVLVTQAGGSLPALHFHRGGTRALLRVLSRYLLLASSPQDSRLYLVFPHDSSALSNSFHHLQLFDQDSSN
VVSRFLQDPYSTTFSSFSRVTNFFRGALQPQPEGAASDLPPPPDDEPEPGFEVISCVELGPRPTVERGPP
VTEEEWARHVGPEGRLQQVPELKNRIFSGGLSPSLRREAWKFLLGYLSWEGTAEEHKAHIRKKTDEYFRM
KLQWKSVSPEQERRNSLLHGYRSLIERDVSRTDRTNKFYEGPENPGLGLLNDILLTYCMYHFDLGYVQGM
SDLLSPILYVIQNEVDAFWCFCGFMELVQGNFEESQETMKRQLGRLLLLLRVLDPLLCDFLDSQDSGSLC
FCFRWLLIWFKREFPFPDVLRLWEVLWTGLPGPNLHLLVACAILDMERDTLMLSGFGSNEILKHINELTM
KLSVEDVLTRAEALHRQLTACPELPHNVQEILGLAPPAEPHSPSPTASPLPLSPTRAPPTPPPSTDTAPQ
PDSSLEILPEEEDEGADS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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