NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS12888.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12888.1 Public Homo sapiens 19 LILRA5 24 110 108 CCDS HistoryNCBI Gene:353514Re-query CCDS DB by CCDS ID:12888.1Re-query CCDS DB by GeneID:353514See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12888.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000432233.8 ENSP00000404236.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000432233.8Link to Ensembl Protein Viewer:ENSP00000404236.4Re-query CCDS DB by Nucleotide ID:ENST00000432233Re-query CCDS DB by Protein ID:ENSP00000404236
Original member Current member NCBI NM_021250.4 NP_067073.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021250.4Link to Protein Sequence:NP_067073.1Re-query CCDS DB by Nucleotide ID:NM_021250Re-query CCDS DB by Protein ID:NP_067073Link to BLAST:NP_067073.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067073.1 299 A6NI73-1 299 100% 0 0

Chromosomal Locations for CCDS 12888.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 54307413 54307549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54307698 54307748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54311414 54311716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54311864 54312148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54312335 54312370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54312537 54312621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54313017 54313019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (900 nt):
ATGGCACCATGGTCTCATCCATCTGCACAGCTGCAGCCAGTGGGAGGAGACGCCGTGAGCCCTGCCCTCA
TGGTTCTGCTCTGCCTCGGGCTGAGTCTGGGCCCCAGGACCCACGTGCAGGCAGGGAACCTCTCCAAAGC
CACCCTCTGGGCTGAGCCAGGCTCTGTGATCAGCCGGGGGAACTCTGTGACCATCCGGTGTCAGGGGACC
CTGGAGGCCCAGGAATACCGTCTGGTTAAAGAGGGAAGCCCAGAACCCTGGGACACACAGAACCCACTGG
AGCCCAAGAACAAGGCCAGATTCTCCATCCCATCCATGACAGAGCACCATGCAGGGAGATACCGCTGTTA
CTACTACAGCCCTGCAGGCTGGTCAGAGCCCAGCGACCCCCTGGAGCTGGTGGTGACAGGATTCTACAAC
AAACCCACCCTCTCAGCCCTGCCCAGTCCTGTGGTGACCTCAGGAGAGAACGTGACCCTCCAGTGTGGCT
CACGGCTGAGATTCGACAGGTTCATTCTGACTGAGGAAGGAGACCACAAGCTCTCCTGGACCTTGGACTC
ACAGCTGACCCCCAGTGGGCAGTTCCAGGCCCTGTTCCCTGTGGGCCCTGTGACCCCCAGCCACAGGTGG
ATGCTCAGATGCTATGGCTCTCGCAGGCATATCCTGCAGGTATGGTCAGAACCCAGTGACCTCCTGGAGA
TTCCGGTCTCAGGAGCAGCTGATAACCTCAGTCCGTCACAAAACAAGTCTGACTCTGGGACTGCCTCACA
CCTTCAGGATTACGCAGTAGAGAATCTCATCCGCATGGGCATGGCCGGCTTGATCCTGGTGGTCCTTGGG
ATTCTGATATTTCAGGATTGGCACAGCCAGAGAAGCCCCCAAGCTGCAGCTGGAAGGTGA

Translation (299 aa):
MAPWSHPSAQLQPVGGDAVSPALMVLLCLGLSLGPRTHVQAGNLSKATLWAEPGSVISRGNSVTIRCQGT
LEAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYN
KPTLSALPSPVVTSGENVTLQCGSRLRFDRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRW
MLRCYGSRRHILQVWSEPSDLLEIPVSGAADNLSPSQNKSDSGTASHLQDYAVENLIRMGMAGLILVVLG
ILIFQDWHSQRSPQAAAGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH