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Report for CCDS12890.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12890.1 Public Homo sapiens 19 LILRA4 24 110 108 CCDS HistoryNCBI Gene:23547Re-query CCDS DB by CCDS ID:12890.1Re-query CCDS DB by GeneID:23547See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12890.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000291759.5 ENSP00000291759.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000291759.5Link to Ensembl Protein Viewer:ENSP00000291759.4Re-query CCDS DB by Nucleotide ID:ENST00000291759Re-query CCDS DB by Protein ID:ENSP00000291759
Original member Current member NCBI NM_012276.5 NP_036408.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_012276.5Link to Protein Sequence:NP_036408.4Re-query CCDS DB by Nucleotide ID:NM_012276Re-query CCDS DB by Protein ID:NP_036408Link to BLAST:NP_036408.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036408.4 499 P59901-1 499 100% 0 0

Chromosomal Locations for CCDS 12890.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 54333572 54333765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54333915 54333965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54336841 54337143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54337400 54337696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54337936 54338235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54338396 54338680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54338866 54338901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 54339060 54339093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1500 nt):
ATGACCCTCATTCTCACAAGCCTGCTCTTCTTTGGGCTGAGCCTGGGCCCCAGGACCCGGGTGCAGGCAG
AAAACCTACTCAAACCCATCCTGTGGGCCGAGCCAGGTCCCGTGATCACCTGGCATAACCCCGTGACCAT
CTGGTGTCAGGGCACCCTGGAGGCCCAGGGGTACCGTCTGGATAAAGAGGGAAACTCAATGTCGAGGCAC
ATATTAAAAACACTGGAGTCTGAAAACAAGGTCAAACTCTCCATCCCATCCATGATGTGGGAACATGCAG
GGCGATATCACTGTTACTATCAGAGCCCTGCAGGCTGGTCAGAGCCCAGCGACCCCCTGGAGCTGGTGGT
GACAGCCTACAGCAGACCCACCCTGTCCGCACTGCCAAGCCCTGTGGTGACCTCAGGAGTGAACGTGACC
CTCCGGTGTGCCTCACGGCTGGGACTGGGCAGGTTCACTCTGATTGAGGAAGGAGACCACAGGCTCTCCT
GGACCCTGAACTCACACCAACACAACCATGGAAAGTTCCAGGCCCTGTTCCCCATGGGCCCCCTGACCTT
CAGCAACAGGGGTACATTCAGATGCTACGGCTATGAAAACAACACCCCATACGTGTGGTCGGAACCCAGT
GACCCCCTGCAGCTACTGGTGTCAGGCGTGTCTAGGAAGCCCTCCCTCCTGACCCTGCAGGGCCCTGTCG
TGACCCCCGGAGAGAATCTGACCCTCCAGTGTGGCTCTGATGTCGGCTACATCAGATACACTCTGTACAA
GGAGGGGGCCGATGGCCTCCCCCAGCGCCCTGGCCGGCAGCCCCAGGCTGGGCTCTCCCAGGCCAACTTC
ACCCTGAGCCCTGTGAGCCGCTCCTACGGGGGCCAGTACAGATGCTACGGCGCACACAACGTCTCCTCCG
AGTGGTCGGCCCCCAGTGACCCCCTGGATATCCTGATCGCAGGACAGATCTCTGACAGACCCTCCCTCTC
AGTGCAGCCGGGCCCCACGGTGACCTCAGGAGAGAAGGTGACCCTGCTGTGTCAGTCATGGGACCCGATG
TTCACTTTCCTTCTGACCAAGGAGGGGGCAGCCCATCCCCCGTTGCGTCTGAGATCAATGTACGGAGCTC
ATAAGTACCAGGCTGAATTCCCCATGAGTCCTGTGACCTCAGCCCACGCGGGGACCTACAGGTGCTACGG
CTCACGCAGCTCCAACCCCTACCTGCTGTCTCACCCCAGTGAGCCCCTGGAGCTCGTGGTCTCAGGAGCA
ACTGAGACCCTCAATCCAGCACAAAAGAAGTCAGATTCCAAGACTGCCCCACACCTCCAGGATTACACAG
TGGAGAATCTCATCCGCATGGGTGTGGCTGGCTTGGTCCTGCTGTTCCTCGGGATTCTGTTATTTGAGGC
TCAGCACAGCCAGAGAAGCCCCCCAAGGTGCAGCCAGGAGGCAAACAGCAGAAAGGACAATGCACCCTTC
AGAGTGGTGGAGCCTTGGGAACAGATCTGA

Translation (499 aa):
MTLILTSLLFFGLSLGPRTRVQAENLLKPILWAEPGPVITWHNPVTIWCQGTLEAQGYRLDKEGNSMSRH
ILKTLESENKVKLSIPSMMWEHAGRYHCYYQSPAGWSEPSDPLELVVTAYSRPTLSALPSPVVTSGVNVT
LRCASRLGLGRFTLIEEGDHRLSWTLNSHQHNHGKFQALFPMGPLTFSNRGTFRCYGYENNTPYVWSEPS
DPLQLLVSGVSRKPSLLTLQGPVVTPGENLTLQCGSDVGYIRYTLYKEGADGLPQRPGRQPQAGLSQANF
TLSPVSRSYGGQYRCYGAHNVSSEWSAPSDPLDILIAGQISDRPSLSVQPGPTVTSGEKVTLLCQSWDPM
FTFLLTKEGAAHPPLRLRSMYGAHKYQAEFPMSPVTSAHAGTYRCYGSRSSNPYLLSHPSEPLELVVSGA
TETLNPAQKKSDSKTAPHLQDYTVENLIRMGVAGLVLLFLGILLFEAQHSQRSPPRCSQEANSRKDNAPF
RVVEPWEQI


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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