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Report for CCDS12941.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12941.1 Public Homo sapiens 19 ZSCAN5A 24 110 108 CCDS HistoryNCBI Gene:79149Re-query CCDS DB by CCDS ID:12941.1Re-query CCDS DB by GeneID:79149See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12941.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000391713.5 ENSP00000375593.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000391713.5Link to Ensembl Protein Viewer:ENSP00000375593.1Re-query CCDS DB by Nucleotide ID:ENST00000391713Re-query CCDS DB by Protein ID:ENSP00000375593
Original member Current member EBI ENST00000587340.5 ENSP00000467631.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000587340.5Link to Ensembl Protein Viewer:ENSP00000467631.1Re-query CCDS DB by Nucleotide ID:ENST00000587340Re-query CCDS DB by Protein ID:ENSP00000467631
Original member Current member EBI ENST00000683990.1 ENSP00000507065.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000683990.1Link to Ensembl Protein Viewer:ENSP00000507065.1Re-query CCDS DB by Nucleotide ID:ENST00000683990Re-query CCDS DB by Protein ID:ENSP00000507065
Original member Current member NCBI NM_001322064.3 NP_001308993.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001322064.3Link to Protein Sequence:NP_001308993.1Re-query CCDS DB by Nucleotide ID:NM_001322064Re-query CCDS DB by Protein ID:NP_001308993Link to BLAST:NP_001308993.1
Original member Current member NCBI NM_001322065.3 NP_001308994.1 Accepted alive Link to Nucleotide Sequence:NM_001322065.3Link to Protein Sequence:NP_001308994.1Re-query CCDS DB by Nucleotide ID:NM_001322065Re-query CCDS DB by Protein ID:NP_001308994Link to BLAST:NP_001308994.1
Original member Current member NCBI NM_001322066.2 NP_001308995.1 Accepted alive Link to Nucleotide Sequence:NM_001322066.2Link to Protein Sequence:NP_001308995.1Re-query CCDS DB by Nucleotide ID:NM_001322066Re-query CCDS DB by Protein ID:NP_001308995Link to BLAST:NP_001308995.1
Original member Current member NCBI NM_001322067.2 NP_001308996.1 Accepted alive Link to Nucleotide Sequence:NM_001322067.2Link to Protein Sequence:NP_001308996.1Re-query CCDS DB by Nucleotide ID:NM_001322067Re-query CCDS DB by Protein ID:NP_001308996Link to BLAST:NP_001308996.1
Original member Current member NCBI NM_001322068.2 NP_001308997.1 Accepted alive Link to Nucleotide Sequence:NM_001322068.2Link to Protein Sequence:NP_001308997.1Re-query CCDS DB by Nucleotide ID:NM_001322068Re-query CCDS DB by Protein ID:NP_001308997Link to BLAST:NP_001308997.1
Original member Current member NCBI NM_001322070.2 NP_001308999.1 Accepted alive Link to Nucleotide Sequence:NM_001322070.2Link to Protein Sequence:NP_001308999.1Re-query CCDS DB by Nucleotide ID:NM_001322070Re-query CCDS DB by Protein ID:NP_001308999Link to BLAST:NP_001308999.1
Original member Current member NCBI NM_001322072.3 NP_001309001.1 Accepted alive Link to Nucleotide Sequence:NM_001322072.3Link to Protein Sequence:NP_001309001.1Re-query CCDS DB by Nucleotide ID:NM_001322072Re-query CCDS DB by Protein ID:NP_001309001Link to BLAST:NP_001309001.1
Original member Current member NCBI NM_001387853.1 NP_001374782.1 Accepted alive Link to Nucleotide Sequence:NM_001387853.1Link to Protein Sequence:NP_001374782.1Re-query CCDS DB by Nucleotide ID:NM_001387853Re-query CCDS DB by Protein ID:NP_001374782Link to BLAST:NP_001374782.1
Original member Current member NCBI NM_001387857.1 NP_001374786.1 Accepted alive Link to Nucleotide Sequence:NM_001387857.1Link to Protein Sequence:NP_001374786.1Re-query CCDS DB by Nucleotide ID:NM_001387857Re-query CCDS DB by Protein ID:NP_001374786Link to BLAST:NP_001374786.1
Original member Current member NCBI NM_001387859.1 NP_001374788.1 Accepted alive Link to Nucleotide Sequence:NM_001387859.1Link to Protein Sequence:NP_001374788.1Re-query CCDS DB by Nucleotide ID:NM_001387859Re-query CCDS DB by Protein ID:NP_001374788Link to BLAST:NP_001374788.1
Original member Current member NCBI NM_024303.4 NP_077279.1 Accepted alive Link to Nucleotide Sequence:NM_024303.4Link to Protein Sequence:NP_077279.1Re-query CCDS DB by Nucleotide ID:NM_024303Re-query CCDS DB by Protein ID:NP_077279Link to BLAST:NP_077279.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001308993.1 496 Q9BUG6-1 496 100% 0 0
NP_001308994.1 496 Q9BUG6-1 496 100% 0 0
NP_001308995.1 496 Q9BUG6-1 496 100% 0 0
NP_001308996.1 496 Q9BUG6-1 496 100% 0 0
NP_001308997.1 496 Q9BUG6-1 496 100% 0 0
NP_001308999.1 496 Q9BUG6-1 496 100% 0 0
NP_001309001.1 496 Q9BUG6-1 496 100% 0 0
NP_001374782.1 496 Q9BUG6-1 496 100% 0 0
NP_001374786.1 496 Q9BUG6-1 496 100% 0 0
NP_001374788.1 496 Q9BUG6-1 496 100% 0 0
NP_077279.1 496 Q9BUG6-1 496 100% 0 0

Chromosomal Locations for CCDS 12941.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 56221575 56222326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56222591 56222741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56223631 56223834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56224663 56225046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1491 nt):
ATGGCTGCAAATTGCACATCCTCATGGAGTCTAGGAGAATCCTGCAACAGACCTGGGTTGGAGCTGCCAC
GGTCTATGGCATCCTCAGAAACTCAACTTGGAAATCACGACGTGGACCCTGAGATTTCTCACGTGAACTT
CAGGATGTTCAGCTGCCCGAAGGAGTCGGACCCCATCCAGGCTCTGAGGAAACTCACTGAGCTGTGCCAT
CTGTGGCTGAGGCCCGACCTCCACACCAAAGAGCAGATCCTGGACATGCTGGTGATGGAGCAGTTCATGA
TCTCCATGCCCCAGGAGCTCCAGGTCTTAGTCATGATGAACGGTGTGCAGAGCTGCAAAGACCTGGAGGA
CCTGCTACGAAATAACAGAAGACCCAAGAAATGGTCTGTGGTCACCTTCCACGGAAAGGAATATATTGTG
CAGGACTCAGATATCGAGATGGCTGAAGCCCCCTCCAGTGTCAGAGATGATCTGAAAGACGTGTCCAGCC
AACGGGCCTCCTCGGTGAACCAGATGCGTCCAGGGGAAGGCCAGGCCCACCGAGAGCTGCAGATCCTGCC
CAGGGTCCCTGCATTGTCCAGGAGGCAGGGAGAGGACTTTCTGCTACACAAGAGTATTGACGTAACAGGT
GACCCAAAGTCTCTGAGACCCAAGCAGACCTTGGAGAAGGATCTGAAGGAAAACAGGGAAGAGAACCCAG
GACTGACATCCCCAGAGCCTCAGCTTCCAAAGAGTCCCACAGATCTGGTGAGAGCAAAGGAGGGGAAGGA
CCCCCCAAAAATAGCCTCTGTGGAAAATGTGGATGCTGACACACCTTCTGCCTGCGTTGTGGAGAGAGAA
GCTTCGACTCACAGCGGGAACAGAGGAGACGCTCTGAATCTGAGCAGTCCCAAAAGAAGCAAACCAGATG
CCTCCTCCATTTCCCAAGAAGAGCCTCAAGGAGAAGCCACACCTGTGGGCAACAGAGAATCCCCGGGACA
AGCTGGGATGAATTCAATTCATTCCCCAGGCCCTGCGAGCCCAGTCAGTCACCCGGATGGCCAAGAAGCC
AAGGCACTGCCGCCCTTTGCATGTGACGTGTGCGAGAAGAGGTTTACGTGTAATTCCAAGCTAGTCATCC
ACAAGAGATCACACACAGGCGAGAGACTCTTTCAATGTAATCTCTGTGGGAAGCGCTTCATGCAGCTTAT
TAGCCTCCAATTTCACCAGCGAACCCACACTGGCGAGAGGCCCTACACGTGTGACGTCTGCCAGAAGCAG
TTCACCCAGAAGTCCTACTTGAAGTGTCACAAGAGAAGCCACACAGGGGAGAAGCCCTTCGAATGTAAAG
ACTGCAAGAAAGTTTTCACCTACAGGGGGAGCCTGAAGGAGCACCAGCGCATCCACTCCGGAGAGAAACC
CTACAAATGTTCCAAGTGTCCAAGAGCCTTCAGTCGGCTGAAATTGTTAAGACGCCACCAGAAAACACAT
CCAGAAGCTACTTCTCAGTGA

Translation (496 aa):
MAANCTSSWSLGESCNRPGLELPRSMASSETQLGNHDVDPEISHVNFRMFSCPKESDPIQALRKLTELCH
LWLRPDLHTKEQILDMLVMEQFMISMPQELQVLVMMNGVQSCKDLEDLLRNNRRPKKWSVVTFHGKEYIV
QDSDIEMAEAPSSVRDDLKDVSSQRASSVNQMRPGEGQAHRELQILPRVPALSRRQGEDFLLHKSIDVTG
DPKSLRPKQTLEKDLKENREENPGLTSPEPQLPKSPTDLVRAKEGKDPPKIASVENVDADTPSACVVERE
ASTHSGNRGDALNLSSPKRSKPDASSISQEEPQGEATPVGNRESPGQAGMNSIHSPGPASPVSHPDGQEA
KALPPFACDVCEKRFTCNSKLVIHKRSHTGERLFQCNLCGKRFMQLISLQFHQRTHTGERPYTCDVCQKQ
FTQKSYLKCHKRSHTGEKPFECKDCKKVFTYRGSLKEHQRIHSGEKPYKCSKCPRAFSRLKLLRRHQKTH
PEATSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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