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Report for CCDS12975.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12975.1 Public Homo sapiens 19 ZSCAN22 24 110 108 CCDS HistoryNCBI Gene:342945Re-query CCDS DB by CCDS ID:12975.1Re-query CCDS DB by GeneID:342945See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12975.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000329665.5 ENSP00000332433.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000329665.5Link to Ensembl Protein Viewer:ENSP00000332433.3Re-query CCDS DB by Nucleotide ID:ENST00000329665Re-query CCDS DB by Protein ID:ENSP00000332433
Original member Current member NCBI NM_001321116.2 NP_001308045.1 Accepted alive Link to Nucleotide Sequence:NM_001321116.2Link to Protein Sequence:NP_001308045.1Re-query CCDS DB by Nucleotide ID:NM_001321116Re-query CCDS DB by Protein ID:NP_001308045Link to BLAST:NP_001308045.1
Original member Current member NCBI NM_181846.3 NP_862829.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_181846.3Link to Protein Sequence:NP_862829.1Re-query CCDS DB by Nucleotide ID:NM_181846Re-query CCDS DB by Protein ID:NP_862829Link to BLAST:NP_862829.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001308045.1 491 P10073 491 100% 0 0
NP_862829.1 491 P10073 491 100% 0 0

Chromosomal Locations for CCDS 12975.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 58334803 58335205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58338254 58339326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1476 nt):
ATGGCCATCCCCAAGCACTCCCTGAGCCCAGTGCCGTGGGAAGAGGACAGCTTCCTTCAAGTGAAGGTGG
AGGAGGAAGAGGAAGCCAGCCTCTCCCAGGGCGGAGAATCCAGCCATGACCACATTGCTCACTCTGAGGC
TGCACGCCTGCGCTTCCGGCACTTCCGCTATGAGGAGGCATCTGGTCCACACGAGGCCCTGGCCCACCTC
CGAGCGCTGTGCTGTCAGTGGCTGCAGCCCGAGGCGCACTCCAAGGAGCAGATACTGGAGCTGCTGGTGC
TGGAGCAGTTCCTGGGTGCGCTGCCCCCAGAGATCCAAGCCTGGGTGGGAGCCCAGAGTCCCAAGAGCGG
AGAGGAAGCCGCTGTGCTGGTGGAGGATCTGACTCAGGTGCTGGACAAGAGAGGATGGGATCCAGGAGCC
GAGCCCACAGAGGCAAGCTGCAAGCAGAGTGACCTGGGAGAGTCAGAGCCATCAAATGTCACTGAGACCC
TCATGGGAGGTGTTTCCCTTGGACCCGCCTTTGTCAAGGCATGTGAACCTGAGGGCAGCTCAGAGAGGTC
TGGACTATCAGGGGAGATCTGGACAAAGTCTGTCACCCAACAGATCCACTTCAAGAAAACTTCAGGGCCT
TACAAGGATGTCCCCACAGACCAGCGTGGCCGTGAATCTGGTGCCTCGAGGAACAGTTCTAGTGCGTGGC
CAAACCTCACCTCCCAAGAGAAGCCTCCTTCAGAAGACAAATTTGATCTGGTGGATGCTTATGGGACAGA
GCCTCCATACACCTACTCAGGGAAGAGGTCCTCCAAGTGTCGCGAGTGTAGGAAGATGTTCCAGAGTGCT
TCGGCGCTCGAGGCACACCAGAAGACCCATTCTCGGAAGACCCCATATGCCTGCAGCGAGTGTGGGAAAG
CCTTCAGCCGGAGCACTCACCTCGCCCAGCACCAGGTTGTCCACACAGGGGCGAAGCCCCATGAGTGTAA
GGAATGTGGGAAGGCCTTCAGCCGAGTCACCCACCTGACTCAGCACCAAAGGATTCATACTGGAGAGAAA
CCCTACAAATGTGGGGAATGTGGTAAAACCTTCAGCCGCAGCACTCACCTCACCCAGCACCAGCGGGTGC
ACACGGGGGAGCGGCCCTACGAGTGTGACGCGTGTGGGAAAGCCTTCAGCCAGAGCACGCACCTGACTCA
ACACCAGCGCATCCACACCGGGGAGAAGCCCTACAAGTGTGACGCGTGTGGCCGAGCCTTCAGCGACTGC
TCAGCCCTGATCCGACATCTGAGAATCCACTCTGGAGAGAAGCCATATCAGTGTAAGGTTTGTCCGAAGG
CCTTTGCACAGAGCTCCTCCCTCATTGAGCACCAGAGGATCCACACGGGAGAGAAGCCTTATAAGTGCAG
CGACTGTGGGAAGGCCTTCAGTCGTAGCTCAGCCCTGATGGTTCACTTGCGGATCCACATCACGGTGCTG
CAATGA

Translation (491 aa):
MAIPKHSLSPVPWEEDSFLQVKVEEEEEASLSQGGESSHDHIAHSEAARLRFRHFRYEEASGPHEALAHL
RALCCQWLQPEAHSKEQILELLVLEQFLGALPPEIQAWVGAQSPKSGEEAAVLVEDLTQVLDKRGWDPGA
EPTEASCKQSDLGESEPSNVTETLMGGVSLGPAFVKACEPEGSSERSGLSGEIWTKSVTQQIHFKKTSGP
YKDVPTDQRGRESGASRNSSSAWPNLTSQEKPPSEDKFDLVDAYGTEPPYTYSGKRSSKCRECRKMFQSA
SALEAHQKTHSRKTPYACSECGKAFSRSTHLAQHQVVHTGAKPHECKECGKAFSRVTHLTQHQRIHTGEK
PYKCGECGKTFSRSTHLTQHQRVHTGERPYECDACGKAFSQSTHLTQHQRIHTGEKPYKCDACGRAFSDC
SALIRHLRIHSGEKPYQCKVCPKAFAQSSSLIEHQRIHTGEKPYKCSDCGKAFSRSSALMVHLRIHITVL
Q


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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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