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Report for CCDS12978.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12978.1 Public Homo sapiens 19 RPS5 24 110 108 CCDS HistoryNCBI Gene:6193Re-query CCDS DB by CCDS ID:12978.1Re-query CCDS DB by GeneID:6193See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12978.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000196551.8 ENSP00000196551.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000196551.8Link to Ensembl Protein Viewer:ENSP00000196551.3Re-query CCDS DB by Nucleotide ID:ENST00000196551Re-query CCDS DB by Protein ID:ENSP00000196551
Original member Current member EBI ENST00000601521.5 ENSP00000470114.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000601521.5Link to Ensembl Protein Viewer:ENSP00000470114.1Re-query CCDS DB by Nucleotide ID:ENST00000601521Re-query CCDS DB by Protein ID:ENSP00000470114
Original member Current member EBI ENST00000596046.1 ENSP00000472985.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000596046.1Link to Ensembl Protein Viewer:ENSP00000472985.1Re-query CCDS DB by Nucleotide ID:ENST00000596046Re-query CCDS DB by Protein ID:ENSP00000472985
Original member Current member NCBI NM_001009.4 NP_001000.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001009.4Link to Protein Sequence:NP_001000.2Re-query CCDS DB by Nucleotide ID:NM_001009Re-query CCDS DB by Protein ID:NP_001000Link to BLAST:NP_001000.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001000.2 204 P46782 204 100% 0 0

Chromosomal Locations for CCDS 12978.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 58388138 58388245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58392976 58393185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58393359 58393487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58394497 58394595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58394682 58394750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (615 nt):
ATGACCGAGTGGGAGACAGCAGCACCAGCGGTGGCAGAGACCCCAGACATCAAGCTCTTTGGGAAGTGGA
GCACCGATGATGTGCAGATCAATGACATTTCCCTGCAGGATTACATTGCAGTGAAGGAGAAGTATGCCAA
GTACCTGCCTCACAGTGCAGGGCGGTATGCCGCCAAACGCTTCCGCAAAGCTCAGTGTCCCATTGTGGAG
CGCCTCACTAACTCCATGATGATGCACGGCCGCAACAACGGCAAGAAGCTCATGACTGTGCGCATCGTCA
AGCATGCCTTCGAGATCATACACCTGCTCACAGGCGAGAACCCTCTGCAGGTCCTGGTGAACGCCATCAT
CAACAGTGGTCCCCGGGAGGACTCCACACGCATTGGGCGCGCCGGGACTGTGAGACGACAGGCTGTGGAT
GTGTCCCCCCTGCGCCGTGTGAACCAGGCCATCTGGCTGCTGTGCACAGGCGCTCGTGAGGCTGCCTTCC
GGAACATTAAGACCATTGCTGAGTGCCTGGCAGATGAGCTCATCAATGCTGCCAAGGGCTCCTCGAACTC
CTATGCCATTAAGAAGAAGGACGAGCTGGAGCGTGTGGCCAAGTCCAACCGCTGA

Translation (204 aa):
MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIVE
RLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVD
VSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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