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Report for CCDS12997.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12997.1 Public Homo sapiens 20 TRIB3 24 110 108 CCDS HistoryNCBI Gene:57761Re-query CCDS DB by CCDS ID:12997.1Re-query CCDS DB by GeneID:57761See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12997.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000217233.9 ENSP00000217233.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000217233.9Link to Ensembl Protein Viewer:ENSP00000217233.3Re-query CCDS DB by Nucleotide ID:ENST00000217233Re-query CCDS DB by Protein ID:ENSP00000217233
Original member Current member NCBI NM_001301188.1 NP_001288117.1 Accepted alive Link to Nucleotide Sequence:NM_001301188.1Link to Protein Sequence:NP_001288117.1Re-query CCDS DB by Nucleotide ID:NM_001301188Re-query CCDS DB by Protein ID:NP_001288117Link to BLAST:NP_001288117.1
Original member Current member NCBI NM_001301190.1 NP_001288119.1 Accepted alive Link to Nucleotide Sequence:NM_001301190.1Link to Protein Sequence:NP_001288119.1Re-query CCDS DB by Nucleotide ID:NM_001301190Re-query CCDS DB by Protein ID:NP_001288119Link to BLAST:NP_001288119.1
Original member Current member NCBI NM_001301193.1 NP_001288122.1 Accepted alive Link to Nucleotide Sequence:NM_001301193.1Link to Protein Sequence:NP_001288122.1Re-query CCDS DB by Nucleotide ID:NM_001301193Re-query CCDS DB by Protein ID:NP_001288122Link to BLAST:NP_001288122.1
Original member Current member NCBI NM_001301196.1 NP_001288125.1 Accepted alive Link to Nucleotide Sequence:NM_001301196.1Link to Protein Sequence:NP_001288125.1Re-query CCDS DB by Nucleotide ID:NM_001301196Re-query CCDS DB by Protein ID:NP_001288125Link to BLAST:NP_001288125.1
Original member Current member NCBI NM_021158.5 NP_066981.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021158.5Link to Protein Sequence:NP_066981.2Re-query CCDS DB by Nucleotide ID:NM_021158Re-query CCDS DB by Protein ID:NP_066981Link to BLAST:NP_066981.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001288117.1 358 Q96RU7 358 100% 0 0
NP_001288119.1 358 Q96RU7 358 100% 0 0
NP_001288122.1 358 Q96RU7 358 100% 0 0
NP_001288125.1 358 Q96RU7 358 100% 0 0
NP_066981.2 358 Q96RU7 358 100% 0 0

Chromosomal Locations for CCDS 12997.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 388011 388301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 391287 391579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 396198 396690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1077 nt):
ATGCGAGCCACCCCTCTGGCTGCTCCTGCGGGTTCCCTGTCCAGGAAGAAGCGGTTGGAGTTGGATGACA
ACTTAGATACCGAGCGTCCCGTCCAGAAACGAGCTCGAAGTGGGCCCCAGCCCAGACTGCCCCCCTGCCT
GTTGCCCCTGAGCCCACCTACTGCTCCAGATCGTGCAACTGCTGTGGCCACTGCCTCCCGTCTTGGGCCC
TATGTCCTCCTGGAGCCCGAGGAGGGCGGGCGGGCCTACCAGGCCCTGCACTGCCCTACAGGCACTGAGT
ATACCTGCAAGGTGTACCCCGTCCAGGAAGCCCTGGCCGTGCTGGAGCCCTATGCGCGGCTGCCCCCGCA
CAAGCATGTGGCTCGGCCCACTGAGGTCCTGGCTGGTACCCAGCTCCTCTACGCCTTTTTCACTCGGACC
CATGGGGACATGCACAGCCTGGTGCGAAGCCGCCACCGTATCCCTGAGCCTGAGGCTGCCGTGCTCTTCC
GCCAGATGGCCACCGCCCTGGCGCACTGTCACCAGCACGGTCTGGTCCTGCGTGATCTCAAGCTGTGTCG
CTTTGTCTTCGCTGACCGTGAGAGGAAGAAGCTGGTGCTGGAGAACCTGGAGGACTCCTGCGTGCTGACT
GGGCCAGATGATTCCCTGTGGGACAAGCACGCGTGCCCAGCCTACGTGGGACCTGAGATACTCAGCTCAC
GGGCCTCATACTCGGGCAAGGCAGCCGATGTCTGGAGCCTGGGCGTGGCGCTCTTCACCATGCTGGCCGG
CCACTACCCCTTCCAGGACTCGGAGCCTGTCCTGCTCTTCGGCAAGATCCGCCGCGGGGCCTACGCCTTG
CCTGCAGGCCTCTCGGCCCCTGCCCGCTGTCTGGTTCGCTGCCTCCTTCGTCGGGAGCCAGCTGAACGGC
TCACAGCCACAGGCATCCTCCTGCACCCCTGGCTGCGACAGGACCCGATGCCCTTAGCCCCAACCCGATC
CCATCTCTGGGAGGCTGCCCAGGTGGTCCCTGATGGACTGGGGCTGGACGAAGCCAGGGAAGAGGAGGGA
GACAGAGAAGTGGTTCTGTATGGCTAG

Translation (358 aa):
MRATPLAAPAGSLSRKKRLELDDNLDTERPVQKRARSGPQPRLPPCLLPLSPPTAPDRATAVATASRLGP
YVLLEPEEGGRAYQALHCPTGTEYTCKVYPVQEALAVLEPYARLPPHKHVARPTEVLAGTQLLYAFFTRT
HGDMHSLVRSRHRIPEPEAAVLFRQMATALAHCHQHGLVLRDLKLCRFVFADRERKKLVLENLEDSCVLT
GPDDSLWDKHACPAYVGPEILSSRASYSGKAADVWSLGVALFTMLAGHYPFQDSEPVLLFGKIRRGAYAL
PAGLSAPARCLVRCLLRREPAERLTATGILLHPWLRQDPMPLAPTRSHLWEAAQVVPDGLGLDEAREEEG
DREVVLYG


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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