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Report for CCDS13010.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13010.1 Public Homo sapiens 20 PSMF1 24 110 108 CCDS HistoryNCBI Gene:9491Re-query CCDS DB by CCDS ID:13010.1Re-query CCDS DB by GeneID:9491See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13010.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000333082.7 ENSP00000327704.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000333082.7Link to Ensembl Protein Viewer:ENSP00000327704.3Re-query CCDS DB by Nucleotide ID:ENST00000333082Re-query CCDS DB by Protein ID:ENSP00000327704
Original member Current member EBI ENST00000335877.11 ENSP00000338039.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000335877.11Link to Ensembl Protein Viewer:ENSP00000338039.6Re-query CCDS DB by Nucleotide ID:ENST00000335877Re-query CCDS DB by Protein ID:ENSP00000338039
Original member Current member NCBI NM_006814.5 NP_006805.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006814.5Link to Protein Sequence:NP_006805.2Re-query CCDS DB by Nucleotide ID:NM_006814Re-query CCDS DB by Protein ID:NP_006805Link to BLAST:NP_006805.2
Original member Current member NCBI NM_178578.4 NP_848693.2 Accepted alive Link to Nucleotide Sequence:NM_178578.4Link to Protein Sequence:NP_848693.2Re-query CCDS DB by Nucleotide ID:NM_178578Re-query CCDS DB by Protein ID:NP_848693Link to BLAST:NP_848693.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006805.2 271 Q92530 271 100% 0 0
NP_848693.2 271 Q92530 271 100% 0 0

Chromosomal Locations for CCDS 13010.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 1118774 1118902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1125498 1125650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1127426 1127508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1135121 1135306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1163130 1163183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1164318 1164476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1165029 1165080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (816 nt):
ATGGCGGGCCTGGAGGTACTGTTCGCATCGGCAGCGCCGGCCATCACCTGCAGGCAGGACGCGCTCGTCT
GCTTCTTGCATTGGGAAGTGGTGACACACGGTTACTTCGGCTTGGGTGTCGGTGACCAGCCGGGTCCCAA
TGATAAGAAGTCAGAACTGCTGCCAGCTGGGTGGAACAACAATAAAGACCTGTATGTCCTCCGGTATGAG
TATAAGGATGGGTCCAGAAAGCTCCTTGTGAAAGCCATCACCGTGGAGAGCAGCATGATCCTCAATGTGC
TGGAATATGGCTCACAGCAAGTGGCAGACTTGACCCTGAACTTGGATGATTATATCGATGCAGAACACCT
GGGTGACTTCCACAGGACCTACAAGAACAGTGAGGAGCTTCGGTCTCGTATTGTGTCTGGAATCATCACA
CCTATCCATGAGCAGTGGGAAAAGGCTAATGTAAGCAGTCCCCACCGGGAGTTCCCCCCTGCTACCGCCA
GAGAGGTGGACCCACTCCGGATTCCTCCACACCACCCACACACCAGTCGGCAGCCTCCCTGGTGTGATCC
CCTGGGCCCGTTTGTTGTCGGGGGAGAAGACTTAGACCCTTTTGGGCCTCGGAGAGGTGGCATGATTGTG
GATCCCCTGAGATCTGGCTTCCCAAGAGCACTTATTGACCCTTCCTCAGGCCTCCCGAACCGACTTCCTC
CAGGCGCTGTGCCCCCAGGAGCTCGCTTTGACCCCTTTGGACCCATTGGGACCAGCCCACCCGGACCTAA
CCCAGACCATCTCCCCCCGCCGGGCTACGATGACATGTACCTGTGA

Translation (271 aa):
MAGLEVLFASAAPAITCRQDALVCFLHWEVVTHGYFGLGVGDQPGPNDKKSELLPAGWNNNKDLYVLRYE
YKDGSRKLLVKAITVESSMILNVLEYGSQQVADLTLNLDDYIDAEHLGDFHRTYKNSEELRSRIVSGIIT
PIHEQWEKANVSSPHREFPPATAREVDPLRIPPHHPHTSRQPPWCDPLGPFVVGGEDLDPFGPRRGGMIV
DPLRSGFPRALIDPSSGLPNRLPPGAVPPGARFDPFGPIGTSPPGPNPDHLPPPGYDDMYL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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