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Report for CCDS13011.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13011.1 Public Homo sapiens 20 TMEM74B 24 110 108 CCDS HistoryNCBI Gene:55321Re-query CCDS DB by CCDS ID:13011.1Re-query CCDS DB by GeneID:55321See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13011.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381894.3 ENSP00000371318.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000381894.3Link to Ensembl Protein Viewer:ENSP00000371318.3Re-query CCDS DB by Nucleotide ID:ENST00000381894Re-query CCDS DB by Protein ID:ENSP00000371318
Original member Current member EBI ENST00000429036.2 ENSP00000400552.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000429036.2Link to Ensembl Protein Viewer:ENSP00000400552.2Re-query CCDS DB by Nucleotide ID:ENST00000429036Re-query CCDS DB by Protein ID:ENSP00000400552
Original member Current member NCBI NM_001304748.2 NP_001291677.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001304748.2Link to Protein Sequence:NP_001291677.1Re-query CCDS DB by Nucleotide ID:NM_001304748Re-query CCDS DB by Protein ID:NP_001291677Link to BLAST:NP_001291677.1
Original member Current member NCBI NM_001387330.1 NP_001374259.1 Accepted alive Link to Nucleotide Sequence:NM_001387330.1Link to Protein Sequence:NP_001374259.1Re-query CCDS DB by Nucleotide ID:NM_001387330Re-query CCDS DB by Protein ID:NP_001374259Link to BLAST:NP_001374259.1
Original member Current member NCBI NM_001387331.1 NP_001374260.1 Accepted alive Link to Nucleotide Sequence:NM_001387331.1Link to Protein Sequence:NP_001374260.1Re-query CCDS DB by Nucleotide ID:NM_001387331Re-query CCDS DB by Protein ID:NP_001374260Link to BLAST:NP_001374260.1
Original member Current member NCBI NM_001387332.1 NP_001374261.1 Accepted alive Link to Nucleotide Sequence:NM_001387332.1Link to Protein Sequence:NP_001374261.1Re-query CCDS DB by Nucleotide ID:NM_001387332Re-query CCDS DB by Protein ID:NP_001374261Link to BLAST:NP_001374261.1
Original member Current member NCBI NM_001387333.1 NP_001374262.1 Accepted alive Link to Nucleotide Sequence:NM_001387333.1Link to Protein Sequence:NP_001374262.1Re-query CCDS DB by Nucleotide ID:NM_001387333Re-query CCDS DB by Protein ID:NP_001374262Link to BLAST:NP_001374262.1
Original member Current member NCBI NM_001387334.1 NP_001374263.1 Accepted alive Link to Nucleotide Sequence:NM_001387334.1Link to Protein Sequence:NP_001374263.1Re-query CCDS DB by Nucleotide ID:NM_001387334Re-query CCDS DB by Protein ID:NP_001374263Link to BLAST:NP_001374263.1
Original member Current member NCBI NM_018354.3 NP_060824.1 Accepted alive Link to Nucleotide Sequence:NM_018354.3Link to Protein Sequence:NP_060824.1Re-query CCDS DB by Nucleotide ID:NM_018354Re-query CCDS DB by Protein ID:NP_060824Link to BLAST:NP_060824.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001291677.1 256 Q9NUR3 256 100% 0 0
NP_001374259.1 256 Q9NUR3 256 100% 0 0
NP_001374260.1 256 Q9NUR3 256 100% 0 0
NP_001374261.1 256 Q9NUR3 256 100% 0 0
NP_001374262.1 256 Q9NUR3 256 100% 0 0
NP_001374263.1 256 Q9NUR3 256 100% 0 0
NP_060824.1 256 Q9NUR3 256 100% 0 0

Chromosomal Locations for CCDS 13011.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 1180848 1181587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1183771 1183801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (771 nt):
ATGCCACCAGCACAGGGGTATGAGTTTGCAGCTGCCAAGGGGCCAAGGGATGAGCTGGGGCCCTCCTTCC
CAATGGCATCTCCCCCTGGTCTGGAACTGAAGACACTGAGCAATGGTCCCCAAGCCCCAAGGAGATCAGC
TCCCCTGGGCCCAGTGGCCCCAACCAGGGAGGGTGTGGAGAATGCCTGCTTCTCCTCAGAGGAGCATGAG
ACCCATTTCCAGAACCCTGGGAACACGAGACTGGGCAGCTCACCCAGTCCCCCTGGGGGTGTCTCCTCAC
TGCCCCGATCCCAGCGGGATGATCTGTCCCTTCATTCAGAGGAGGGGCCAGCCCTGGAGCCCGTGAGCCG
CCCGGTGGATTATGGCTTTGTTTCCGCCCTCGTTTTCCTGGTGAGTGGGATTCTTCTGGTGGTGACAGCA
TACGCCATCCCCCGTGAGGCTCGAGTCAATCCGGACACAGTGACAGCGCGGGAGATGGAACGACTGGAGA
TGTACTACGCCCGCCTAGGCTCCCACCTGGACAGGTGCATCATCGCAGGCCTCGGGCTGCTCACGGTGGG
CGGCATGCTCTTGTCGGTGCTGCTCATGGTCTCCCTGTGCAAGGGCGAGCTGTACCGCCGGAGGACCTTC
GTCCCCGGCAAGGGCTCCAGGAAGACCTACGGCTCCATTAACCTGCGCATGAGACAGCTCAATGGGGATG
GGGGCCAGGCCCTGGTGGAGAATGAAGTTGTCCAGGTCTCAGAGACTAGCCACACCCTCCAGAGGTCTTA
A

Translation (256 aa):
MPPAQGYEFAAAKGPRDELGPSFPMASPPGLELKTLSNGPQAPRRSAPLGPVAPTREGVENACFSSEEHE
THFQNPGNTRLGSSPSPPGGVSSLPRSQRDDLSLHSEEGPALEPVSRPVDYGFVSALVFLVSGILLVVTA
YAIPREARVNPDTVTAREMERLEMYYARLGSHLDRCIIAGLGLLTVGGMLLSVLLMVSLCKGELYRRRTF
VPGKGSRKTYGSINLRMRQLNGDGGQALVENEVVQVSETSHTLQRS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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