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Report for CCDS13018.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13018.1 Public Homo sapiens 20 SIRPD 24 110 108 CCDS HistoryNCBI Gene:128646Re-query CCDS DB by CCDS ID:13018.1Re-query CCDS DB by GeneID:128646See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13018.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381623.4 ENSP00000371036.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000381623.4Link to Ensembl Protein Viewer:ENSP00000371036.3Re-query CCDS DB by Nucleotide ID:ENST00000381623Re-query CCDS DB by Protein ID:ENSP00000371036
Original member Current member NCBI NM_178460.3 NP_848555.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_178460.3Link to Protein Sequence:NP_848555.2Re-query CCDS DB by Nucleotide ID:NM_178460Re-query CCDS DB by Protein ID:NP_848555Link to BLAST:NP_848555.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848555.2 197 Q9H106 197 100% 0 0

Chromosomal Locations for CCDS 13018.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 1534425 1534441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1537155 1537310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1551691 1552038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1557581 1557653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (594 nt):
ATGCCCATCCCTGCCTCCCCACTCCACCCACCTCTGCCTTCCTTACTGCTGTATCTGCTGCTTGAACTGG
CAGGAGTCACACATGTGTTCCATGTGCAACAAACGGAGATGTCACAGACTGTATCAACTGGGGAGTCAAT
CATCTTGAGTTGCAGCGTACCCAATACCTTACCAAATGGACCTGTCTTGTGGTTCAAGGGAACAGGGCCA
AACCGGAAATTAATCTACAATTTCAAACAAGGTAACTTTCCCAGAGTAAAAGAGATTGGAGACACCACCA
AGCCTGGCAACACAGACTTTTCCACCCGCATCCGTGAAATCTCTCTTGCTGATGCTGGCACCTATTACTG
CGTGAAGTTCATAAAAGGAAGAGCTATCAAGGAGTACCAATCAGGTCGGGGCACTCAGGTGTTTGTTACT
GAGCAGAATCCAAGACCTCCCAAGAACAGACCTGCAGGCAGAGCAGGCTCCAGGGCCCACCATGATGCCC
ATACCTGCCTCTCGGCCCTGCCTGAGAGAAACAGCACAAACTATTTCGTCCAACCCTGCTGCTGCCTCCG
GCTGCTGGGACTCACAGGCTTGCTGTCAAAATAA

Translation (197 aa):
MPIPASPLHPPLPSLLLYLLLELAGVTHVFHVQQTEMSQTVSTGESIILSCSVPNTLPNGPVLWFKGTGP
NRKLIYNFKQGNFPRVKEIGDTTKPGNTDFSTRIREISLADAGTYYCVKFIKGRAIKEYQSGRGTQVFVT
EQNPRPPKNRPAGRAGSRAHHDAHTCLSALPERNSTNYFVQPCCCLRLLGLTGLLSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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