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Report for CCDS13038.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13038.1 Public Homo sapiens 20 PTPRA 24 110 108 CCDS HistoryNCBI Gene:5786Re-query CCDS DB by CCDS ID:13038.1Re-query CCDS DB by GeneID:5786See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13038.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000399903.7 ENSP00000382787.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000399903.7Link to Ensembl Protein Viewer:ENSP00000382787.2Re-query CCDS DB by Nucleotide ID:ENST00000399903Re-query CCDS DB by Protein ID:ENSP00000382787
Original member Current member NCBI NM_001385305.1 NP_001372234.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001385305.1Link to Protein Sequence:NP_001372234.1Re-query CCDS DB by Nucleotide ID:NM_001385305Re-query CCDS DB by Protein ID:NP_001372234Link to BLAST:NP_001372234.1
Original member Current member NCBI NM_001385306.1 NP_001372235.1 Accepted alive Link to Nucleotide Sequence:NM_001385306.1Link to Protein Sequence:NP_001372235.1Re-query CCDS DB by Nucleotide ID:NM_001385306Re-query CCDS DB by Protein ID:NP_001372235Link to BLAST:NP_001372235.1
Original member Current member NCBI NM_001385307.1 NP_001372236.1 Accepted alive Link to Nucleotide Sequence:NM_001385307.1Link to Protein Sequence:NP_001372236.1Re-query CCDS DB by Nucleotide ID:NM_001385307Re-query CCDS DB by Protein ID:NP_001372236Link to BLAST:NP_001372236.1
Original member Current member NCBI NM_001385308.1 NP_001372237.1 Accepted alive Link to Nucleotide Sequence:NM_001385308.1Link to Protein Sequence:NP_001372237.1Re-query CCDS DB by Nucleotide ID:NM_001385308Re-query CCDS DB by Protein ID:NP_001372237Link to BLAST:NP_001372237.1
Original member Current member NCBI NM_001388320.1 NP_001375249.1 Accepted alive Link to Nucleotide Sequence:NM_001388320.1Link to Protein Sequence:NP_001375249.1Re-query CCDS DB by Nucleotide ID:NM_001388320Re-query CCDS DB by Protein ID:NP_001375249Link to BLAST:NP_001375249.1
Original member Current member NCBI NM_002836.4 NP_002827.1 Accepted alive Link to Nucleotide Sequence:NM_002836.4Link to Protein Sequence:NP_002827.1Re-query CCDS DB by Nucleotide ID:NM_002836Re-query CCDS DB by Protein ID:NP_002827Link to BLAST:NP_002827.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001372234.1 802 P18433-5 802 100% 0 0
NP_001372235.1 802 P18433-5 802 100% 0 0
NP_001372236.1 802 P18433-5 802 100% 0 0
NP_001372237.1 802 P18433-5 802 100% 0 0
NP_001375249.1 802 P18433-5 802 100% 0 0
NP_002827.1 802 P18433-5 802 100% 0 0

Chromosomal Locations for CCDS 13038.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 2964278 2964350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2964861 2965202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2975215 2975241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2986765 2986849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2988032 2988105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2988338 2988474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3005056 3005146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3007344 3007420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3015849 3015885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3017816 3017913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3021309 3021428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3022054 3022220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3022689 3022824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3024472 3024621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3026687 3026780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3027121 3027197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3027707 3027841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3035585 3035710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3035790 3035941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3037154 3037289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3038059 3038133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2409 nt):
ATGGATTCCTGGTTCATTCTTGTTCTGCTCGGCAGTGGTCTGATATGTGTCAGTGCCAACAATGCTACCA
CAGTTGCACCTTCTGTAGGAATTACAAGATTAATTAACTCATCAACGGCAGAACCAGTTAAAGAAGAGGC
CAAAACTTCAAATCCAACTTCTTCACTAACTTCTCTTTCTGTGGCACCAACATTCAGCCCAAATATAACT
CTGGGACCCACCTATTTAACCACTGTCAATTCTTCAGACTCTGACAATGGGACCACAAGAACAGCAAGCA
CCAATTCTATAGGCATTACAATTTCACCAAATGGAACGTGGCTTCCAGATAACCAGTTCACGGATGCCAG
AACAGAACCCTGGGAGGGGAATTCCAGCACCGCAGCAACCACTCCAGAAACTTTCCCTCCTTCAGGTAAT
TCTGACTCGAAGGACAGAAGAGATGAGACACCAATTATTGCGGTGATGGTGGCCCTGTCCTCTCTGCTAG
TGATCGTGTTTATTATCATAGTTTTGTACATGTTAAGGTTTAAGAAATACAAGCAAGCTGGGAGCCATTC
CAATTCTTTCCGCTTATCCAACGGCCGCACTGAGGATGTGGAGCCCCAGAGTGTGCCACTTCTGGCCAGA
TCCCCAAGCACCAACAGGAAATACCCACCCCTGCCCGTGGACAAGCTGGAAGAGGAAATTAACCGGAGAA
TGGCAGACGACAATAAGCTCTTCAGGGAGGAATTCAACGCTCTCCCTGCATGTCCTATCCAGGCCACCTG
TGAGGCTGCTTCCAAGGAGGAAAACAAGGAAAAAAATCGATATGTAAACATCTTGCCTTATGACCACTCT
AGAGTCCACCTGACACCGGTTGAAGGGGTTCCAGATTCTGATTACATCAATGCTTCATTCATCAACGGCT
ACCAAGAAAAGAACAAATTCATTGCTGCACAAGGACCAAAAGAAGAAACGGTGAATGATTTCTGGCGGAT
GATCTGGGAACAAAACACAGCCACCATCGTCATGGTTACCAACCTGAAGGAGAGAAAGGAGTGCAAGTGC
GCCCAGTACTGGCCAGACCAAGGCTGCTGGACCTATGGGAATATTCGGGTGTCTGTAGAGGATGTGACTG
TCCTGGTGGACTACACAGTACGGAAGTTCTGCATCCAGCAGGTGGGCGACATGACCAACAGAAAGCCACA
GCGCCTCATCACTCAGTTCCACTTTACCAGCTGGCCAGACTTTGGGGTGCCTTTTACCCCGATCGGCATG
CTCAAGTTCCTCAAGAAGGTGAAGGCCTGTAACCCTCAGTATGCAGGGGCCATCGTGGTCCACTGCAGTG
CAGGTGTAGGGCGTACAGGTACCTTTGTCGTCATTGATGCCATGCTGGACATGATGCATACAGAACGGAA
GGTGGACGTGTATGGCTTTGTGAGCCGGATCCGGGCACAGCGCTGCCAGATGGTGCAAACCGATATGCAG
TATGTCTTCATATACCAAGCCCTTCTGGAGCATTATCTCTATGGAGATACAGAACTGGAAGTGACCTCTC
TAGAAACCCACCTGCAGAAAATTTACAACAAAATCCCAGGGACCAGCAACAATGGATTAGAGGAGGAGTT
TAAGAAGTTAACATCAATCAAAATCCAGAATGACAAGATGCGGACTGGAAACCTTCCAGCCAACATGAAG
AAGAACCGTGTTTTACAGATCATTCCATATGAATTCAACAGAGTGATCATTCCAGTTAAGCGGGGCGAAG
AGAATACAGACTATGTGAACGCATCCTTTATTGATGGCTACCGGCAGAAGGACTCCTATATCGCCAGCCA
GGGCCCTCTTCTCCACACAATTGAGGACTTCTGGCGAATGATCTGGGAGTGGAAATCCTGCTCTATCGTG
ATGCTAACAGAACTGGAGGAGAGAGGCCAGGAGAAGTGTGCCCAGTACTGGCCATCTGATGGACTGGTGT
CCTATGGAGATATTACAGTGGAACTGAAGAAGGAGGAGGAATGTGAGAGCTACACCGTCCGAGACCTCCT
GGTCACCAACACCAGGGAGAATAAGAGCCGGCAGATCCGGCAGTTCCACTTCCATGGCTGGCCTGAAGTG
GGCATCCCCAGTGACGGAAAGGGCATGATCAGCATCATCGCCGCCGTGCAGAAGCAGCAGCAGCAGTCAG
GGAACCACCCCATCACCGTGCACTGCAGCGCCGGGGCAGGAAGGACGGGGACCTTCTGTGCCCTGAGCAC
CGTCCTGGAGCGTGTGAAAGCAGAGGGGATTTTGGATGTCTTCCAGACTGTCAAGAGCCTGCGGCTACAG
AGGCCACACATGGTCCAGACACTGGAACAGTATGAGTTCTGCTACAAGGTGGTGCAGGAGTATATTGATG
CATTCTCAGATTATGCCAACTTCAAGTAA

Translation (802 aa):
MDSWFILVLLGSGLICVSANNATTVAPSVGITRLINSSTAEPVKEEAKTSNPTSSLTSLSVAPTFSPNIT
LGPTYLTTVNSSDSDNGTTRTASTNSIGITISPNGTWLPDNQFTDARTEPWEGNSSTAATTPETFPPSGN
SDSKDRRDETPIIAVMVALSSLLVIVFIIIVLYMLRFKKYKQAGSHSNSFRLSNGRTEDVEPQSVPLLAR
SPSTNRKYPPLPVDKLEEEINRRMADDNKLFREEFNALPACPIQATCEAASKEENKEKNRYVNILPYDHS
RVHLTPVEGVPDSDYINASFINGYQEKNKFIAAQGPKEETVNDFWRMIWEQNTATIVMVTNLKERKECKC
AQYWPDQGCWTYGNIRVSVEDVTVLVDYTVRKFCIQQVGDMTNRKPQRLITQFHFTSWPDFGVPFTPIGM
LKFLKKVKACNPQYAGAIVVHCSAGVGRTGTFVVIDAMLDMMHTERKVDVYGFVSRIRAQRCQMVQTDMQ
YVFIYQALLEHYLYGDTELEVTSLETHLQKIYNKIPGTSNNGLEEEFKKLTSIKIQNDKMRTGNLPANMK
KNRVLQIIPYEFNRVIIPVKRGEENTDYVNASFIDGYRQKDSYIASQGPLLHTIEDFWRMIWEWKSCSIV
MLTELEERGQEKCAQYWPSDGLVSYGDITVELKKEEECESYTVRDLLVTNTRENKSRQIRQFHFHGWPEV
GIPSDGKGMISIIAAVQKQQQQSGNHPITVHCSAGAGRTGTFCALSTVLERVKAEGILDVFQTVKSLRLQ
RPHMVQTLEQYEFCYKVVQEYIDAFSDYANFK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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