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Report for CCDS13091.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13091.1 Public Homo sapiens 20 SHLD1 24 110 108 CCDS HistoryNCBI Gene:149840Re-query CCDS DB by CCDS ID:13091.1Re-query CCDS DB by GeneID:149840See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13091.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000303142.11 ENSP00000305875.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000303142.11Link to Ensembl Protein Viewer:ENSP00000305875.6Re-query CCDS DB by Nucleotide ID:ENST00000303142Re-query CCDS DB by Protein ID:ENSP00000305875
Original member Current member NCBI NM_001303477.2 NP_001290406.1 Accepted alive Link to Nucleotide Sequence:NM_001303477.2Link to Protein Sequence:NP_001290406.1Re-query CCDS DB by Nucleotide ID:NM_001303477Re-query CCDS DB by Protein ID:NP_001290406Link to BLAST:NP_001290406.1
Original member Current member NCBI NM_152504.4 NP_689717.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152504.4Link to Protein Sequence:NP_689717.2Re-query CCDS DB by Nucleotide ID:NM_152504Re-query CCDS DB by Protein ID:NP_689717Link to BLAST:NP_689717.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001290406.1 205 Q8IYI0-1 205 100% 0 0
NP_689717.2 205 Q8IYI0-1 205 100% 0 0

Chromosomal Locations for CCDS 13091.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 5772866 5773043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 5863024 5863463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (618 nt):
ATGGCAGCCAGGGACGCCACTTCAGGCAGCCTGTCAGAGGAGAGCAGTGCTTTGGACCTGCCATCAGCGT
GTGACATAAGAGATTACGTCCTGCAGGGACCCAGCCAAGAAGCCAACAGCGAGGCTTTCAGTTCTTTGGA
ATTCCATTCTTTTCCTTATTCTTCTGATGTGGATCCAGACACCAGTAACTTAAATATAGAACAAAATAAC
TCCTGGACCGCTGAGAACTTCTGGCTTGACCCTGCTGTGAAAGGCCAGTCAGAGAAGGAAGAGGATGATG
GCCTTCGGAAATCCCTGGATAGATTCTATGAAATGTTTGGTCATCCACAGCCAGGCTCTGCAAACTCACT
CTCTGCATCTGTCTGCAAGTGCCTGTCTCAGAAAATCACTCAACTAAGAGGCCAGGAGAGCCAAAAGTAT
GCCCTCCGCAGTTTTCAAATGGCCCGGGTGATCTTCAACCGGGACGGCTGCTCCGTCTTACAGAGGCATT
CCAGGGACACCCACTTCTACCCACTGGAGGAAGGAAGTACATCTTTGGATGATGAAAAGCCAAACCCAGG
ACTGTCAAAGGATATTACTCATTTCCTCTTGCAGCAGAATGTAATGAAAGACCTGTAA

Translation (205 aa):
MAARDATSGSLSEESSALDLPSACDIRDYVLQGPSQEANSEAFSSLEFHSFPYSSDVDPDTSNLNIEQNN
SWTAENFWLDPAVKGQSEKEEDDGLRKSLDRFYEMFGHPQPGSANSLSASVCKCLSQKITQLRGQESQKY
ALRSFQMARVIFNRDGCSVLQRHSRDTHFYPLEEGSTSLDDEKPNPGLSKDITHFLLQQNVMKDL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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