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Report for CCDS13177.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13177.1 Public Homo sapiens 20 DEFB118 24 110 108 CCDS HistoryNCBI Gene:117285Re-query CCDS DB by CCDS ID:13177.1Re-query CCDS DB by GeneID:117285See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13177.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000253381.3 ENSP00000253381.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000253381.3Link to Ensembl Protein Viewer:ENSP00000253381.2Re-query CCDS DB by Nucleotide ID:ENST00000253381Re-query CCDS DB by Protein ID:ENSP00000253381
Original member Current member NCBI NM_054112.3 NP_473453.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_054112.3Link to Protein Sequence:NP_473453.1Re-query CCDS DB by Nucleotide ID:NM_054112Re-query CCDS DB by Protein ID:NP_473453Link to BLAST:NP_473453.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_473453.1 123 Q96PH6 123 100% 0 0

Chromosomal Locations for CCDS 13177.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 31368651 31368708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 31372857 31373170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (372 nt):
ATGAAACTCCTGCTGCTGGCTCTTCCTATGCTTGTGCTCCTACCCCAAGTGATCCCAGCCTATAGTGGTG
AAAAAAAATGCTGGAACAGATCAGGGCACTGCAGGAAACAATGCAAAGATGGAGAAGCAGTGAAAGATAC
ATGCAAAAATCTTCGAGCTTGCTGCATTCCATCCAATGAAGACCACAGGCGAGTTCCTGCGACATCTCCC
ACACCCTTGAGTGACTCAACACCAGGAATTATTGATGATATTTTAACAGTAAGGTTCACGACAGACTACT
TTGAAGTAAGCAGCAAGAAAGATATGGTTGAAGAGTCTGAGGCGGGAAGGGGAACTGAGACCTCTCTTCC
AAATGTTCACCATAGCTCATGA

Translation (123 aa):
MKLLLLALPMLVLLPQVIPAYSGEKKCWNRSGHCRKQCKDGEAVKDTCKNLRACCIPSNEDHRRVPATSP
TPLSDSTPGIIDDILTVRFTTDYFEVSSKKDMVEESEAGRGTETSLPNVHHSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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