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Report for CCDS13270.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13270.1 Public Homo sapiens 20 CNBD2 24 110 108 CCDS HistoryNCBI Gene:140894Re-query CCDS DB by CCDS ID:13270.1Re-query CCDS DB by GeneID:140894See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13270.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000349339.5 ENSP00000340954.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000349339.5Link to Ensembl Protein Viewer:ENSP00000340954.1Re-query CCDS DB by Nucleotide ID:ENST00000349339Re-query CCDS DB by Protein ID:ENSP00000340954
Original member Current member NCBI NM_080834.4 NP_543024.2 Accepted alive Link to Nucleotide Sequence:NM_080834.4Link to Protein Sequence:NP_543024.2Re-query CCDS DB by Nucleotide ID:NM_080834Re-query CCDS DB by Protein ID:NP_543024Link to BLAST:NP_543024.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_543024.2 572 Q96M20-2 572 100% 0 0

Chromosomal Locations for CCDS 13270.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 35968763 35968813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35972629 35972766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35975949 35976002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35980459 35980622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35983982 35984138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35984627 35984778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35987395 35987533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35995038 35995152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36008297 36008474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36011137 36011257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36023614 36023771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36030357 36030648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1719 nt):
ATGAGGAGACATATGGTAACTTATGCCTGGCAGCTCCTGAAGAAGGAACTGGGACTGTACCAGCTCGCCA
TGGATATCATCATAATGATCCGAGTGTGTAAAATGTTCCGCCAAGGCCTCAGGGGATTCCGGGAATATCA
AATCATTGAGACTGCTCACTGGAAGCACCCTATCTTCTCCTTCTGGGATAAAAAGATGCAAAGCCGAGTC
ACATTTGATACCATGGACTTCATTGCAGAGGAGGGTCACTTTCCTCCAAAGGCCATTCAGATCATGCAGA
AGAAGCCTTCCTGGAGAACAGAGGATGAGATCCAGGCCGTCTGTAACATCTTGCAGGTTCTGGATAGCTA
TCGGAACTACGCAGAGCCCCTGCAGCTGCTCCTGGCCAAAGTCATGCGCTTTGAACGGTTTGGTCGCAGG
CGTGTGATCATCAAGAAGGGGCAGAAGGGCAACAGCTTTTATTTCATCTACCTGGGCACAGTTGCAATAA
CCAAGGACGAGGATGGCAGCAGTGCCTTCCTAGATCCCCACCCGAAATTGCTGCACAAGGGTAGCTGTTT
TGGGGAAATGGACGTTCTGCATGCTTCAGTGAGGAGGTCCACCATCGTCTGTATGGAAGAAACGGAGTTC
CTGGTTGTTGACCGGGAGGACTTCTTTGCTAATAAGCTGGACCAGGAAGTTCAGAAGGATGCTCAGTATC
GGTTTGAATTTTTTAGGAAGATGGAGCTGTTTGCATCATGGTCTGATGAGAAGCTCTGGCAGCTGGTAGC
CATGGCGAAGATAGAGAGGTTCTCGTATGGGCAGCTGATCTCAAAAGATTTTGGAGAGTCACCCTTCATC
ATGTTTATCAGCAAGGGCAGCTGTGAAGTCCTGCGGCTGTTGGACCTTGGGGCCTCCCCTTCCTACCGTA
GATGGATCTGGCAGCACCTGGAGCTGATAGATGGCAGACCTCTGAAGACCCACCTGAGTGAATACTCTCC
TATGGAAAGATTTAAGGAATTCCAGATCAAATCATATCCTCTGCAAGACTTTAGCTCCTTGAAACTTCCA
CATCTCAAAAAAGCCTGGGGGCTACAGGGGACAAGCTTCAGCAGGAAGATCAGAACCTCAGGAGACACTC
TCCCCAAGATGCTGGGCCCGAAGATCCAATCCAGGCCTGCTCAGTCGATCAAATGTGCCATGATCAATAT
CAAGCCTGGTGAGCTCCCCAAGGAGGCTGCAGTGGGGGCCTACGTGAAGGTGCACACTGTGGAGCAGGGA
GAAATTTTGGCCTTCCTTCCAGAGGGTGAATGCGACACACGACCCTTGATCCTGATGAGCCTGGGAAATG
AGTTGATACGGATAAGGAAGGAAATATTTTATGAACTGATTGACAATGATGACGAGATGATAAAAAAGTT
GTTAAAGCTCAATATTGCATTCCCCAGTGATGAAGATATGTGCCAGAAGTTCCTCCAGCAGAACAGCTGG
AATATCTTTCGGAAGGACCTGTTGCAGCTGCTCGTGGAGCCTTGCCAAAGTCAACTGTTCACTCCAAACC
GGCCCAAGAAGAGAGAGATCTACAACCCTAAGTCTGTGGTCCTGGATTTGTGCAGCATCAACAAGACGAC
TAAACCTCGTTATCCTATTTTTATGGCACCCCAGAAATACCTCCCCCCATTGAGGATTGTCCAAGCCATC
AAAGCACCTCGGTACAAAATCCGAGAACTCTTGGCTTAG

Translation (572 aa):
MRRHMVTYAWQLLKKELGLYQLAMDIIIMIRVCKMFRQGLRGFREYQIIETAHWKHPIFSFWDKKMQSRV
TFDTMDFIAEEGHFPPKAIQIMQKKPSWRTEDEIQAVCNILQVLDSYRNYAEPLQLLLAKVMRFERFGRR
RVIIKKGQKGNSFYFIYLGTVAITKDEDGSSAFLDPHPKLLHKGSCFGEMDVLHASVRRSTIVCMEETEF
LVVDREDFFANKLDQEVQKDAQYRFEFFRKMELFASWSDEKLWQLVAMAKIERFSYGQLISKDFGESPFI
MFISKGSCEVLRLLDLGASPSYRRWIWQHLELIDGRPLKTHLSEYSPMERFKEFQIKSYPLQDFSSLKLP
HLKKAWGLQGTSFSRKIRTSGDTLPKMLGPKIQSRPAQSIKCAMINIKPGELPKEAAVGAYVKVHTVEQG
EILAFLPEGECDTRPLILMSLGNELIRIRKEIFYELIDNDDEMIKKLLKLNIAFPSDEDMCQKFLQQNSW
NIFRKDLLQLLVEPCQSQLFTPNRPKKREIYNPKSVVLDLCSINKTTKPRYPIFMAPQKYLPPLRIVQAI
KAPRYKIRELLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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