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Report for CCDS1334.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1334.1 Public Homo sapiens 1 TOR1AIP2 24 110 108 CCDS HistoryNCBI Gene:163590Re-query CCDS DB by CCDS ID:1334.1Re-query CCDS DB by GeneID:163590See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1334.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367612.7 ENSP00000356584.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367612.7Link to Ensembl Protein Viewer:ENSP00000356584.3Re-query CCDS DB by Nucleotide ID:ENST00000367612Re-query CCDS DB by Protein ID:ENSP00000356584
Original member Current member EBI ENST00000609928.6 ENSP00000477486.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000609928.6Link to Ensembl Protein Viewer:ENSP00000477486.1Re-query CCDS DB by Nucleotide ID:ENST00000609928Re-query CCDS DB by Protein ID:ENSP00000477486
Original member Current member NCBI NM_001199260.2 NP_001186189.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001199260.2Link to Protein Sequence:NP_001186189.1Re-query CCDS DB by Nucleotide ID:NM_001199260Re-query CCDS DB by Protein ID:NP_001186189Link to BLAST:NP_001186189.1
Original member Current member NCBI NM_001349934.2 NP_001336863.1 Accepted alive Link to Nucleotide Sequence:NM_001349934.2Link to Protein Sequence:NP_001336863.1Re-query CCDS DB by Nucleotide ID:NM_001349934Re-query CCDS DB by Protein ID:NP_001336863Link to BLAST:NP_001336863.1
Original member Current member NCBI NM_001349935.2 NP_001336864.1 Accepted alive Link to Nucleotide Sequence:NM_001349935.2Link to Protein Sequence:NP_001336864.1Re-query CCDS DB by Nucleotide ID:NM_001349935Re-query CCDS DB by Protein ID:NP_001336864Link to BLAST:NP_001336864.1
Original member Current member NCBI NM_001349936.2 NP_001336865.1 Accepted alive Link to Nucleotide Sequence:NM_001349936.2Link to Protein Sequence:NP_001336865.1Re-query CCDS DB by Nucleotide ID:NM_001349936Re-query CCDS DB by Protein ID:NP_001336865Link to BLAST:NP_001336865.1
Original member Current member NCBI NM_001349937.2 NP_001336866.1 Accepted alive Link to Nucleotide Sequence:NM_001349937.2Link to Protein Sequence:NP_001336866.1Re-query CCDS DB by Nucleotide ID:NM_001349937Re-query CCDS DB by Protein ID:NP_001336866Link to BLAST:NP_001336866.1
Original member Current member NCBI NM_145034.5 NP_659471.1 Accepted alive Link to Nucleotide Sequence:NM_145034.5Link to Protein Sequence:NP_659471.1Re-query CCDS DB by Nucleotide ID:NM_145034Re-query CCDS DB by Protein ID:NP_659471Link to BLAST:NP_659471.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186189.1 470 Q8NFQ8-1 470 100% 0 0
NP_001336863.1 470 Q8NFQ8-1 470 100% 0 0
NP_001336864.1 470 Q8NFQ8-1 470 100% 0 0
NP_001336865.1 470 Q8NFQ8-1 470 100% 0 0
NP_001336866.1 470 Q8NFQ8-1 470 100% 0 0
NP_659471.1 470 Q8NFQ8-1 470 100% 0 0

Chromosomal Locations for CCDS 1334.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 179846071 179846828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179847535 179847636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179850845 179851363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179852632 179852665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1413 nt):
ATGGCCGACAGTGGACTTAGGGAACCTCAAGAGGACTCTCAAAAGGATTTGGAAAATGATCCATCAGTAA
ATTCTCAGGCGCAGGAGACCACAATCATAGCAAGTAATGCTGAAGAAGCTGAGATCCTACACTCTGCCTG
TGGTCTTAGCAAAGACCACCAAGAGGTAGAGACAGAAGGTCCAGAAAGTGCAGATACAGGTGATAAATCA
GAAAGTCCAGATGAAGCAAATGTGGGGAAACATCCAAAGGATAAAACAGAAGATGAGAACAAGCAGAGTT
TTCTGGATGGCGGAAAAGGGCATCACCTCCCTTCAGAAAATCTGGGTAAAGAACCCTTGGATCCAGATCC
CAGCCATTCTCCAAGTGACAAGGTAGGAAGAGCAGATGCACACTTAGGGAGCAGCTCTGTGGCCCTCCCT
AAGGAAGCGAGTGACGGAACTGGAGCATCTCAGGAACCACCTACTACAGACTCCCAGGAGGCCCAGAGTC
CTGGTCATTCCAGTGCAGGGCAAGAGGGTGAGGATACACTGAGGAGGCGACTGCTGGCCCCAGAGGCTGG
AAGTCATCCACAACAAACACAAAAATTGGAAGAAATTAAAGAGAATGCACAGGACACCATGAGACAGATT
AATAAAAAGGGTTTTTGGAGCTATGGCCCTGTGATTCTTGTCGTCCTGGTTGTGGCTGTTGTGGCAAGTT
CTGTGAATAGCTACTATTCCTCTCCAGCCCAGCAAGTGCCCAAAAATCCAGCTTTGGAGGCCTTTTTGGC
CCAGTTTAGCCAATTGGAAGATAAATTTCCAGGCCAGAGTTCCTTCCTGTGGCAGAGAGGACGGAAGTTT
CTCCAGAAGCACCTCAATGCTTCCAACCCCACTGAGCCAGCCACCATCATATTTACAGCAGCTCGGGAGG
GAAGAGAGACCCTGAAGTGCCTGAGCCACCATGTTGCAGATGCCTACACCTCTTCCCAGAAAGTCTCTCC
CATTCAGATTGATGGGGCTGGAAGGACCTGGCAGGACAGTGACACGGTCAAGCTGTTGGTTGACCTGGAG
CTGAGCTATGGGTTTGAGAATGGCCAGAAGGCTGCTGTGGTACACCACTTCGAATCCTTCCCTGCCGGCT
CCACTTTGATCTTCTATAAGTATTGTGATCATGAGAATGCTGCCTTTAAAGATGTGGCCCTGGTCCTGAC
TGTTCTGCTAGAGGAGGAAACATTAGAAGCAAGTGTAGGCCCAAGGGAAACGGAAGAAAAAGTGAGAGAC
TTACTCTGGGCCAAGTTTACCAACTCTGACACTCCCACCTCCTTCAACCACATGGACTCAGACAAATTGA
GTGGGCTGTGGAGCCGAATTTCACACCTGGTACTGCCAGTCCAGCCAGTGAGTAGCATAGAAGAACAGGG
GTGCCTTTTCTAA

Translation (470 aa):
MADSGLREPQEDSQKDLENDPSVNSQAQETTIIASNAEEAEILHSACGLSKDHQEVETEGPESADTGDKS
ESPDEANVGKHPKDKTEDENKQSFLDGGKGHHLPSENLGKEPLDPDPSHSPSDKVGRADAHLGSSSVALP
KEASDGTGASQEPPTTDSQEAQSPGHSSAGQEGEDTLRRRLLAPEAGSHPQQTQKLEEIKENAQDTMRQI
NKKGFWSYGPVILVVLVVAVVASSVNSYYSSPAQQVPKNPALEAFLAQFSQLEDKFPGQSSFLWQRGRKF
LQKHLNASNPTEPATIIFTAAREGRETLKCLSHHVADAYTSSQKVSPIQIDGAGRTWQDSDTVKLLVDLE
LSYGFENGQKAAVVHHFESFPAGSTLIFYKYCDHENAAFKDVALVLTVLLEEETLEASVGPRETEEKVRD
LLWAKFTNSDTPTSFNHMDSDKLSGLWSRISHLVLPVQPVSSIEEQGCLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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