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Report for CCDS13383.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13383.1 Public Homo sapiens 20 SPATA25 24 110 108 CCDS HistoryNCBI Gene:128497Re-query CCDS DB by CCDS ID:13383.1Re-query CCDS DB by GeneID:128497See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13383.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372519.4 ENSP00000361597.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000372519.4Link to Ensembl Protein Viewer:ENSP00000361597.3Re-query CCDS DB by Nucleotide ID:ENST00000372519Re-query CCDS DB by Protein ID:ENSP00000361597
Original member Current member NCBI NM_080608.4 NP_542175.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_080608.4Link to Protein Sequence:NP_542175.1Re-query CCDS DB by Nucleotide ID:NM_080608Re-query CCDS DB by Protein ID:NP_542175Link to BLAST:NP_542175.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_542175.1 227 Q9BR10 227 100% 0 0

Chromosomal Locations for CCDS 13383.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 45886517 45887145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45887536 45887590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (684 nt):
ATGTCCTACTTCAGGACTCCACAAACTCATCCAGGTCCTCTGCCTTCCGGCCAAGGTGGGGCTGCTTCTC
CAGGCTTGTCCCTTGGCCTCTGTAGTCCTGTAGAGCCAGTGGTGGTGGCCTCTGGTGGAACAGGCCCACT
GAGCCAGAAAGCTGAGCAGGTGGCACCTGCTGCCCAGGCCTGGGGCCCAGCCCTGGCAATGCCACAAGCC
AGGGGCTGCCCTGGGGGGACTAGCTGGGAGACACTACGGAAGGAATACAGCCGAAACTGCCACAAATTCC
CGCATGTGAGGCAGCTGGAGAGCTTGGGCTGGGACAATGGCTACTCCAGAAGCAGAGCCCCTGACCTGGG
TGGCCCCAGCAGGCCTAGGCCCCTGATGCTGTGTGGGCTGTCACCACGGGTTCTACCGGTACCCTCTGAG
GCAGTGGGGAAGGAGGCCAGCTCCCAGCCTGATATCTGCATCCTCACCCTCGCCATGATGATCGCTGGCA
TCCCCACCGTGCCCGTCCCAGGAGTTCGGGAAGAGGACCTGATCTGGGCCGCTCAAGCTTTCATGATGGC
CCATCCGGAGCCAGAGGGTGCTGTGGAGGGGGCGCGGTGGGAGCAGGCACATGCCCACACAGCCTCTGGG
AAGATGCCCCTAGTGAGATCTAAAAGGGGCCAGCCTCCTGGCTCCTGCTTGTAG

Translation (227 aa):
MSYFRTPQTHPGPLPSGQGGAASPGLSLGLCSPVEPVVVASGGTGPLSQKAEQVAPAAQAWGPALAMPQA
RGCPGGTSWETLRKEYSRNCHKFPHVRQLESLGWDNGYSRSRAPDLGGPSRPRPLMLCGLSPRVLPVPSE
AVGKEASSQPDICILTLAMMIAGIPTVPVPGVREEDLIWAAQAFMMAHPEPEGAVEGARWEQAHAHTASG
KMPLVRSKRGQPPGSCL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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