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Report for CCDS13416.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13416.2 Public Homo sapiens 20 DDX27 24 110 108 CCDS HistoryNCBI Gene:55661Re-query CCDS DB by CCDS ID:13416.2Re-query CCDS DB by GeneID:55661See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 13416.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000618172.5 ENSP00000482680.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000618172.5Link to Ensembl Protein Viewer:ENSP00000482680.1Re-query CCDS DB by Nucleotide ID:ENST00000618172Re-query CCDS DB by Protein ID:ENSP00000482680
Original member Current member NCBI NM_017895.8 NP_060365.8 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017895.8Link to Protein Sequence:NP_060365.8Re-query CCDS DB by Nucleotide ID:NM_017895Re-query CCDS DB by Protein ID:NP_060365Link to BLAST:NP_060365.8

Chromosomal Locations for CCDS 13416.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 49219449 49219541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49221452 49221598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49222957 49223016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49223268 49223433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49224945 49224991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49225113 49225199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49226430 49226535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49228715 49228888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49230199 49230349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49233306 49233405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49233568 49233709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49234935 49235088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49236150 49236231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49236333 49236510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49238949 49239055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49239236 49239338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49241893 49241987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49242083 49242206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49242594 49242681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49243629 49243703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49243816 49243834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2298 nt):
ATGCTTGCGGACCTCGGCTTAATCGGAACCATAGGCGAGGATGACGAGGTGCCGGTGGAGCCCGAGTCTG
ACTCCGGGGACGAGGAAGAGGAGGGGCCCATTGTGCTGGGCAGACGACAAAAAGCTTTGGGGAAGAACCG
CAGTGCTGATTTCAACCCTGATTTCGTTTTCACTGAGAAGGAGGGGACGTACGATGGCAGCTGGGCCCTG
GCTGATGTCATGAGCCAACTCAAGAAGAAGAGGGCAGCCACTACATTAGATGAGAAGATTGAGAAAGTTC
GAAAGAAAAGGAAAACAGAGGATAAAGAAGCCAAGTCTGGGAAGTTGGAAAAGGAGAAAGAAGCAAAGGA
AGGCTCTGAACCAAAGGAGCAGGAAGACCTTCAAGAGAATGATGAGGAAGGCTCAGAAGATGAAGCCTCG
GAGACTGACTACTCATCAGCTGATGAGAACATCCTCACCAAAGCAGATACACTCAAAGTAAAGGATCGGA
AGAAGAAGAAGAAGAAAGGACAGGAAGCAGGAGGATTTTTTGAAGATGCATCTCAGTACGATGAAAACCT
CTCGTTCCAGGACATGAACCTTTCCCGCCCTCTTCTGAAGGCCATTACAGCCATGGGCTTCAAGCAGCCC
ACCCCGATCCAGAAGGCGTGCATACCTGTGGGTCTATTGGGGAAGGACATCTGTGCCTGTGCAGCCACTG
GGACAGGTAAAACTGCCGCCTTTGCCCTGCCTGTTTTGGAGCGTCTGATTTATAAACCCCGCCAGGCTCC
AGTCACCCGCGTGCTGGTGCTAGTGCCCACCCGAGAGCTGGGCATCCAGGTGCACTCTGTCACCAGACAG
CTGGCCCAGTTCTGCAACATCACCACCTGCCTGGCTGTGGGCGGCTTGGATGTGAAGTCTCAGGAAGCAG
CTCTTCGGGCAGCGCCTGACATCCTCATCGCCACCCCAGGCCGGCTCATCGATCACCTCCACAACTGCCC
TTCCTTCCACCTGAGCAGCATCGAGGTGCTCATCCTGGACGAGGCTGACAGGATGCTGGATGAGTACTTT
GAGGAGCAGATGAAGGAGATCATCCGAATGTGTTCCCACCACCGCCAGACCATGCTCTTCTCGGCCACCA
TGACAGACGAGGTGAAAGATCTGGCTTCTGTCTCCTTGAAGAATCCTGTCCGGATATTTGTGAACAGCAA
CACAGATGTGGCTCCCTTCCTGCGGCAGGAGTTCATCCGGATCCGGCCTAATCGTGAAGGAGACCGGGAA
GCCATCGTGGCAGCTTTGTTGACGAGGACCTTCACTGACCATGTGATGCTGTTCACGCAAACCAAGAAGC
AGGCCCACCGCATGCACATCCTCCTGGGGCTCATGGGGCTGCAGGTGGGTGAGCTCCATGGCAACTTGTC
ACAGACGCAGCGGCTGGAGGCCCTCCGGCGTTTTAAGGATGAACAGATTGACATCCTCGTGGCCACTGAT
GTGGCAGCCCGTGGACTTGACATTGAGGGGGTCAAAACGGTAATCAACTTCACAATGCCTAATACCATCA
AACATTATGTCCACCGGGTGGGGCGAACAGCACGTGCTGGCAGGGCTGGGCGCTCAGTCTCTCTGGTGGG
AGAAGATGAGCGGAAGATGCTGAAGGAGATTGTAAAAGCTGCCAAGGCCCCTGTGAAGGCCAGGATACTT
CCCCAAGATGTCATCCTCAAATTCCGGGACAAGATTGAGAAAATGGAGAAAGATGTGTATGCAGTTCTGC
AGCTAGAGGCGGAGGAAAAAGAGATGCAGCAGTCAGAAGCCCAGATCAATACAGCAAAGCGGCTCCTGGA
GAAGGGGAAGGAGGCAGTGGTCCAAGAGCCCGAGAGGAGCTGGTTCCAGACCAAAGAAGAGAGGAAGAAG
GAGAAAATTGCCAAAGCTCTGCAGGAATTTGACTTGGCCTTAAGAGGAAAGAAGAAAAGGAAGAAGTTTA
TGAAGGATGCCAAAAAAAAGGGGGAGATGACAGCAGAGGAAAGGTCTCAGTTTGAAATCCTCAAGGCGCA
GATGTTTGCTGAACGGCTAGCGAAGAGGAATCGCAGAGCCAAGCGGGCCCGAGCAATGCCCGAGGAGGAG
CCAGTGAGAGGTCCTGCCAAGAAGCAAAAGCAGGGGAAGAAATCTGTATTTGATGAAGAACTCACCAACA
CAAGCAAGAAGGCCCTGAAACAGTATCGAGCTGGCCCTTCCTTTGAAGAAAGGAAACAGTTGGGCTTGCC
CCACCAGAGACGAGGAGGAAACTTTAAATCTAAATCCAGATACAAGAGGAGGAAGTAG

Translation (765 aa):
MLADLGLIGTIGEDDEVPVEPESDSGDEEEEGPIVLGRRQKALGKNRSADFNPDFVFTEKEGTYDGSWAL
ADVMSQLKKKRAATTLDEKIEKVRKKRKTEDKEAKSGKLEKEKEAKEGSEPKEQEDLQENDEEGSEDEAS
ETDYSSADENILTKADTLKVKDRKKKKKKGQEAGGFFEDASQYDENLSFQDMNLSRPLLKAITAMGFKQP
TPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQ
LAQFCNITTCLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYF
EEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDRE
AIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATD
VAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVKAAKAPVKARIL
PQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGKEAVVQEPERSWFQTKEERKK
EKIAKALQEFDLALRGKKKRKKFMKDAKKKGEMTAEERSQFEILKAQMFAERLAKRNRRAKRARAMPEEE
PVRGPAKKQKQGKKSVFDEELTNTSKKALKQYRAGPSFEERKQLGLPHQRRGGNFKSKSRYKRRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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