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Report for CCDS13426.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13426.1 Public Homo sapiens 20 UBE2V1 24 110 108 CCDS HistoryNCBI Gene:7335Re-query CCDS DB by CCDS ID:13426.1Re-query CCDS DB by GeneID:7335See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13426.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000340309.7 ENSP00000340305.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000340309.7Link to Ensembl Protein Viewer:ENSP00000340305.3Re-query CCDS DB by Nucleotide ID:ENST00000340309Re-query CCDS DB by Protein ID:ENSP00000340305
Original member Current member EBI ENST00000371677.7 ENSP00000360742.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000371677.7Link to Ensembl Protein Viewer:ENSP00000360742.3Re-query CCDS DB by Nucleotide ID:ENST00000371677Re-query CCDS DB by Protein ID:ENSP00000360742
Original member Current member NCBI NM_001257393.2 NP_001244322.1 Accepted alive Link to Nucleotide Sequence:NM_001257393.2Link to Protein Sequence:NP_001244322.1Re-query CCDS DB by Nucleotide ID:NM_001257393Re-query CCDS DB by Protein ID:NP_001244322Link to BLAST:NP_001244322.1
Original member Current member NCBI NM_021988.6 NP_068823.2 Accepted alive Link to Nucleotide Sequence:NM_021988.6Link to Protein Sequence:NP_068823.2Re-query CCDS DB by Nucleotide ID:NM_021988Re-query CCDS DB by Protein ID:NP_068823Link to BLAST:NP_068823.2
Original member Current member NCBI NM_199144.3 NP_954595.1 Accepted alive Link to Nucleotide Sequence:NM_199144.3Link to Protein Sequence:NP_954595.1Re-query CCDS DB by Nucleotide ID:NM_199144Re-query CCDS DB by Protein ID:NP_954595Link to BLAST:NP_954595.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001244322.1 170 Q13404-7 170 100% 0 0
NP_068823.2 170 Q13404-7 170 100% 0 0
NP_954595.1 170 Q13404-7 170 100% 0 0

Chromosomal Locations for CCDS 13426.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 50082768 50082914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 50084129 50084254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 50096672 50096820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 50115485 50115575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (513 nt):
ATGCCAGGAGAGGTTCAAGCGTCTTACCTGAAGTCACAAAGCAAACTGAGTGATGAAGGAAGACTTGAAC
CTAGAAAATTTCACTGCAAAGGAGTAAAAGTCCCTCGCAATTTCCGACTGTTGGAAGAACTCGAAGAAGG
CCAGAAAGGAGTAGGAGATGGCACAGTTAGCTGGGGTCTAGAAGATGACGAAGACATGACACTTACAAGA
TGGACAGGGATGATAATTGGGCCTCCAAGAACAATTTATGAAAACCGAATATACAGCCTTAAAATAGAAT
GTGGACCTAAATACCCAGAAGCACCCCCCTTTGTAAGATTTGTAACAAAAATTAATATGAATGGAGTAAA
TAGTTCTAATGGAGTGGTGGACCCAAGAGCCATATCAGTGCTAGCAAAATGGCAGAATTCATATAGCATC
AAAGTTGTCCTGCAAGAGCTTCGGCGCCTAATGATGTCTAAAGAAAATATGAAACTCCCTCAGCCGCCCG
AAGGACAGTGTTACAGCAATTAA

Translation (170 aa):
MPGEVQASYLKSQSKLSDEGRLEPRKFHCKGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTR
WTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSI
KVVLQELRRLMMSKENMKLPQPPEGQCYSN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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