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Report for CCDS1343.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1343.1 Public Homo sapiens 1 IER5 24 110 108 CCDS HistoryNCBI Gene:51278Re-query CCDS DB by CCDS ID:1343.1Re-query CCDS DB by GeneID:51278See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1343.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367577.7 ENSP00000356549.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367577.7Link to Ensembl Protein Viewer:ENSP00000356549.4Re-query CCDS DB by Nucleotide ID:ENST00000367577Re-query CCDS DB by Protein ID:ENSP00000356549
Original member Current member NCBI NM_016545.5 NP_057629.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016545.5Link to Protein Sequence:NP_057629.2Re-query CCDS DB by Nucleotide ID:NM_016545Re-query CCDS DB by Protein ID:NP_057629Link to BLAST:NP_057629.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057629.2 327 Q5VY09 327 100% 0 0

Chromosomal Locations for CCDS 1343.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 181088903 181089886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (984 nt):
ATGGAGTTCAAGCTGGAGGCTCATCGCATCGTCAGCATCTCTCTGGGCAAGATCTACAACTCGCGGGTCC
AGCGCGGCGGCATCAAGCTGCATAAGAACCTCCTGGTCTCGCTGGTGCTGCGCAGCGCCCGCCAAGTCTA
CCTGAGCGACCCGTGCCCCGGCCTCTACCTGGCCGGTCCCGCTGGGACCCCGGCGCCGCCACCGCAGCAG
CAGCCCGGGGAGCCGGCGGCCGGGCCACCCGCCGGCTGGGGAGAGCCGCCCCCGCCCGCCGCTCGTGCCT
CTTGGCCGGAGACCGAGCCGCAGCCGGAGCGCTCCTCCGTCTCAGACGCGCCGCGGGTAGGGGACGAGGT
GCCGGTGGCCACGGTGACTGGAGTCGGGGACGTTTTTCAGGGCGGAGAGGCGGACGCGACGGAAGCTGCC
TGGAGCCGCGTGGAGGGGCCGCGCCAGGCGGCGGCCAGAGAAGCCGAGGGTACCGCCGGAGGCTGGGGCG
TCTTCCCCGAGGTATCTCGTGCCGCGCGCCGCCCCTGCGGCTGCCCCCTAGGCGGGGAGGACCCGCCGGG
TACACCGGCCGCGACCCCCCGCGCTGCCTGCTGCTGCGCGCCGCAACCAGCGGAGGACGAGCCCCCCGCG
CCGCCCGCGGTGTGCCCCAGGAAGCGCTGCGCGGCGGGGGTGGGCGGCGGCCCAGCGGGCTGCCCGGCGC
CCGGCTCGACCCCGCTCAAGAAGCCCCGCCGGAACTTAGAGCAGCCGCCGAGTGGAGGAGAGGACGACGA
CGCGGAGGAGATGGAGACCGGGAACGTGGCTAACCTCATCAGCATCTTCGGTTCCAGTTTCTCGGGACTC
CTACGGAAAAGCCCCGGGGGCGGCAGAGAGGAAGAGGAGGGAGAGGAGAGCGGTCCGGAAGCCGCCGAGC
CCGGGCAGATCTGCTGCGATAAGCCGGTGCTGAGAGACATGAACCCCTGGAGCACAGCCATCGTGGCCTT
CTGA

Translation (327 aa):
MEFKLEAHRIVSISLGKIYNSRVQRGGIKLHKNLLVSLVLRSARQVYLSDPCPGLYLAGPAGTPAPPPQQ
QPGEPAAGPPAGWGEPPPPAARASWPETEPQPERSSVSDAPRVGDEVPVATVTGVGDVFQGGEADATEAA
WSRVEGPRQAAAREAEGTAGGWGVFPEVSRAARRPCGCPLGGEDPPGTPAATPRAACCCAPQPAEDEPPA
PPAVCPRKRCAAGVGGGPAGCPAPGSTPLKKPRRNLEQPPSGGEDDDAEEMETGNVANLISIFGSSFSGL
LRKSPGGGREEEEGEESGPEAAEPGQICCDKPVLRDMNPWSTAIVAF


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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