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Report for CCDS13475.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13475.1 Public Homo sapiens 20 TUBB1 24 110 108 CCDS HistoryNCBI Gene:81027Re-query CCDS DB by CCDS ID:13475.1Re-query CCDS DB by GeneID:81027See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13475.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000217133.2 ENSP00000217133.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000217133.2Link to Ensembl Protein Viewer:ENSP00000217133.1Re-query CCDS DB by Nucleotide ID:ENST00000217133Re-query CCDS DB by Protein ID:ENSP00000217133
Original member Current member NCBI NM_030773.4 NP_110400.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030773.4Link to Protein Sequence:NP_110400.1Re-query CCDS DB by Nucleotide ID:NM_030773Re-query CCDS DB by Protein ID:NP_110400Link to BLAST:NP_110400.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_110400.1 451 Q9H4B7 451 100% 0 0

Chromosomal Locations for CCDS 13475.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 59019523 59019579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59022845 59022953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59023490 59023600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59023705 59024783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1356 nt):
ATGCGTGAAATTGTCCATATTCAGATTGGCCAGTGTGGCAACCAGATCGGAGCCAAGTTCTGGGAGATGA
TT
GGTGAGGAACACGGGATCGACTTGGCTGGGAGCGACCGCGGGGCCTCGGCCTTGCAGCTGGAGAGAAT
C
AGCGTGTACTACAACGAAGCCTACGGTAGGAAATATGTGCCCCGAGCAGTCTTGGTGGACCTAGAACCT
GGG
ACGATGGACAGCATTCGATCTAGCAAATTAGGAGCTCTCTTTCAACCCGACAGTTTTGTCCATGGTA
AC
TCTGGGGCTGGCAACAACTGGGCCAAAGGCCACTACACGGAGGGAGCCGAGCTGATCGAGAATGTCCT
A
GAGGTGGTGAGGCACGAGAGTGAGAGCTGTGACTGCCTGCAGGGCTTCCAGATCGTCCACTCCCTGGGC
GGG
GGCACAGGCTCCGGGATGGGCACTCTGCTCATGAACAAGATTAGAGAGGAGTACCCGGACCGGATCA
TG
AATTCCTTCAGCGTCATGCCTTCTCCCAAGGTGTCGGACACTGTGGTGGAGCCCTACAACGCGGTTCT
G
TCTATCCACCAGCTGATTGAGAATGCAGATGCCTGTTTCTGCATTGACAATGAGGCCCTCTATGACATC
TGC
TTCCGTACCCTGAAGCTGACGACACCCACCTATGGGGATCTCAACCACCTAGTGTCCTTGACCATGA
GC
GGCATAACCACCTCCCTCCGGTTCCCGGGTCAGCTCAACGCAGACCTGCGCAAGCTGGCGGTGAACAT
G
GTCCCCTTCCCCCGCCTGCACTTCTTTATGCCCGGCTTTGCCCCACTCACGGCCCAGGGCAGCCAGCAG
TAC
CGAGCCCTCTCCGTGGCCGAGCTCACCCAGCAGATGTTCGATGCCCGCAATACCATGGCTGCCTGTG
AC
CTCCGCCGTGGCCGCTACCTCACAGTGGCCTGCATTTTCCGGGGCAAGATGTCCACCAAGGAAGTGGA
C
CAGCAACTGCTCTCCGTGCAGACCAGGAACAGCAGCTGCTTTGTGGAGTGGATTCCCAACAACGTCAAG
GTG
GCTGTCTGCGACATCCCGCCCCGGGGGCTGAGCATGGCCGCCACCTTCATTGGCAACAACACGGCCA
TC
CAAGAGATCTTTAATAGGGTCTCTGAGCATTTCTCAGCCATGTTCAAAAGGAAAGCTTTTGTGCACTG
G
TACACCAGCGAAGGGATGGACATAAACGAATTTGGGGAAGCTGAAAATAACATCCATGATTTGGTATCC
GAG
TACCAACAATTTCAAGATGCCAAAGCAGTTCTAGAGGAAGATGAAGAGGTCACGGAGGAGGCAGAAA
TG
GAGCCAGAAGATAAGGGACATTAA


Translation (451 aa):
MREIVHIQIGQCGNQIGAKFWEMIGEEHGIDLAGSDRGASALQLERISVYYNEAYGRKYVPRAVLVDLEP
G
TMDSIRSSKLGALFQPDSFVH
GNSGAGNNWAKGHYTEGAELIENVLEVVRHESESCDCLQGFQIVHSLG
G
GTGSGMGTLLMNKIREEYPDRIMNSFSVMPSPKVSDTVVEPYNAVLSIHQLIENADACFCIDNEALYDI
C
FRTLKLTTPTYGDLNHLVSLTMSGITTSLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTAQGSQQ
Y
RALSVAELTQQMFDARNTMAACDLRRGRYLTVACIFRGKMSTKEVDQQLLSVQTRNSSCFVEWIPNNVK
V
AVCDIPPRGLSMAATFIGNNTAIQEIFNRVSEHFSAMFKRKAFVHWYTSEGMDINEFGEAENNIHDLVS
E
YQQFQDAKAVLEEDEEVTEEAEMEPEDKGH




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 Genome Browser Links:   Ensembl Genome Browser
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