NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS13534.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13534.1 Public Homo sapiens 20 ZGPAT 24 110 108 CCDS HistoryNCBI Gene:84619Re-query CCDS DB by CCDS ID:13534.1Re-query CCDS DB by GeneID:84619See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13534.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000328969.5 ENSP00000332013.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000328969.5Link to Ensembl Protein Viewer:ENSP00000332013.5Re-query CCDS DB by Nucleotide ID:ENST00000328969Re-query CCDS DB by Protein ID:ENSP00000332013
Original member Current member NCBI NM_032527.5 NP_115916.3 Accepted alive Link to Nucleotide Sequence:NM_032527.5Link to Protein Sequence:NP_115916.3Re-query CCDS DB by Nucleotide ID:NM_032527Re-query CCDS DB by Protein ID:NP_115916Link to BLAST:NP_115916.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115916.3 531 Q8N5A5-1 531 100% 0 0

Chromosomal Locations for CCDS 13534.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 63708581 63709164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63733219 63733352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63733587 63733739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63734645 63734824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63735159 63735564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63735781 63735919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1596 nt):
ATGGACGAGGAGAGCCTGGAGTCGGCCTTGCAGACCTACCGTGCGCAGCTGCAGCAGGTGGAGCTGGCCT
TGGGCGCCGGCCTGGATTCGTCTGAGCAGGCTGACCTGCGCCAGCTGCAGGGGGACCTGAAGGAGCTCAT
CGAGCTCACCGAGGCCAGCCTGGTGTCTGTCAGGAAGAGCAGCTTGTTGGCCGCGCTGGACGAAGAGCGC
CCGGGCCGCCAGGAAGATGCTGAGTACCAGGCTTTCCGGGAGGCCATCACTGAGGCGGTGGAGGCACCAG
CAGCGGCCCGTGGGTCCGGATCAGAGACCGTTCCTAAAGCAGAGGCGGGGCCAGAATCTGCGGCAGGTGG
GCAGGAGGAGGAAGAGGGAGAGGACGAGGAAGAGCTGAGTGGGACAAAGGTGAGCGCGCCCTACTACAGC
TCCTGGGGCACTCTGGAGTATCACAACGCCATGGTGGTGGGAACGGAAGAGGCGGAGGATGGCTCGGCGG
GTGTCCGTGTGCTTTACCTGTACCCCACTCACAAGTCTCTGAAGCCGTGCCCGTTCTTCCTGGAGGGAAA
GTGCCGCTTTAAGGAGAACTGCAGGTTCTCCCATGGGCAGGTGGTCTCTCTGGATGAGCTGCGCCCCTTC
CAGGACCCAGACCTGAGCTCCCTGCAGGCCGGCTCTGCGTGTCTGGCCAAGCACCAGGATGGCCTCTGGC
ACGCAGCACGCATCACCGATGTGGACAACGGCTACTACACAGTCAAGTTTGACTCGCTGCTGCTGAGGGA
GGCCGTGGTGGAGGGGGACGGCATCCTGCCCCCACTGCGCACAGAGGCCACAGAGTCCGACTCAGACAGC
GACGGTACGGGTGACTCCAGCTATGCCAGAGTGGTGGGGTCGGACGCCGTGGACTCTGCACAGTCCTCTG
CCCTCTGTCCGTCTCTTGCAGTGGTGGGGTCAGATGCTGTGGACTCTGGGACCTGCAGCTCTGCCTTTGC
TGGCTGGGAGGTGCACACGCGAGGTATAGGCTCCAGACTCCTCACCAAGATGGGCTATGAGTTTGGCAAG
GGTTTGGGCCGACACGCGGAAGGCCGGGTGGAGCCCATCCATGCTGTGGTGTTGCCTCGAGGGAAGTCGC
TGGACCAGTGTGTGGAGACCCTGCAGAAGCAGACCAGGGTTGGCAAGGCTGGCACCAACAAGCCCCCCAG
GTGCCGGGGAAGAGGGGCCAGGCCTGGGGGCCGCCCAGCTCCTCGGAATGTGTTTGACTTCCTCAATGAA
AAGCTGCAAGGTCAGGCTCCTGGGGCCCTAGAAGCCGGGGCGGCCCCAGCGGGGAGGAGGAGCAAGGACA
TGTACCATGCCAGCAAGAGTGCCAAGCGGGCCCTGAGCCTGCGGCTCTTCCAGACTGAGGAGAAGATCGA
GCGAACCCAGCGGGACATCAGGAGCATCCAGGAGGCTCTCGCCCGCAACGCTGGCCGGCATAGCGTGGCG
TCAGCCCAGCTGCAGGAGAAGCTGGCAGGAGCCCAGCGCCAGCTGGGGCAGCTCCGGGCTCAGGAAGCCG
GCCTGCAGCAGGAGCAGAGGAAGGCAGACACCCACAAGAAGATGACTGAGTTCTAG

Translation (531 aa):
MDEESLESALQTYRAQLQQVELALGAGLDSSEQADLRQLQGDLKELIELTEASLVSVRKSSLLAALDEER
PGRQEDAEYQAFREAITEAVEAPAAARGSGSETVPKAEAGPESAAGGQEEEEGEDEEELSGTKVSAPYYS
SWGTLEYHNAMVVGTEEAEDGSAGVRVLYLYPTHKSLKPCPFFLEGKCRFKENCRFSHGQVVSLDELRPF
QDPDLSSLQAGSACLAKHQDGLWHAARITDVDNGYYTVKFDSLLLREAVVEGDGILPPLRTEATESDSDS
DGTGDSSYARVVGSDAVDSAQSSALCPSLAVVGSDAVDSGTCSSAFAGWEVHTRGIGSRLLTKMGYEFGK
GLGRHAEGRVEPIHAVVLPRGKSLDQCVETLQKQTRVGKAGTNKPPRCRGRGARPGGRPAPRNVFDFLNE
KLQGQAPGALEAGAAPAGRRSKDMYHASKSAKRALSLRLFQTEEKIERTQRDIRSIQEALARNAGRHSVA
SAQLQEKLAGAQRQLGQLRAQEAGLQQEQRKADTHKKMTEF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH