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Report for CCDS13555.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13555.1 Public Homo sapiens 20 RGS19 24 110 108 CCDS HistoryNCBI Gene:10287Re-query CCDS DB by CCDS ID:13555.1Re-query CCDS DB by GeneID:10287See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13555.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000332298.9 ENSP00000333194.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000332298.9Link to Ensembl Protein Viewer:ENSP00000333194.5Re-query CCDS DB by Nucleotide ID:ENST00000332298Re-query CCDS DB by Protein ID:ENSP00000333194
Original member Current member EBI ENST00000395042.2 ENSP00000378483.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000395042.2Link to Ensembl Protein Viewer:ENSP00000378483.1Re-query CCDS DB by Nucleotide ID:ENST00000395042Re-query CCDS DB by Protein ID:ENSP00000378483
Original member Current member NCBI NM_001039467.2 NP_001034556.1 Accepted alive Link to Nucleotide Sequence:NM_001039467.2Link to Protein Sequence:NP_001034556.1Re-query CCDS DB by Nucleotide ID:NM_001039467Re-query CCDS DB by Protein ID:NP_001034556Link to BLAST:NP_001034556.1
Original member Current member NCBI NM_005873.3 NP_005864.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005873.3Link to Protein Sequence:NP_005864.1Re-query CCDS DB by Nucleotide ID:NM_005873Re-query CCDS DB by Protein ID:NP_005864Link to BLAST:NP_005864.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034556.1 217 P49795 217 100% 0 0
NP_005864.1 217 P49795 217 100% 0 0

Chromosomal Locations for CCDS 13555.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 64073853 64074044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 64074144 64074378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 64074467 64074541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 64076525 64076646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 64076857 64076886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (654 nt):
ATGCCCACCCCGCATGAGGCTGAGAAGCAGATCACAGGGCCAGAGGAGGCGGACCGGCCCCCTTCAATGT
CCAGTCATGATACAGCCTCTCCAGCGGCCCCCAGCCGCAACCCCTGCTGCCTGTGCTGGTGCTGCTGCTG
TAGCTGCTCCTGGAACCAAGAGCGGCGGCGCGCGTGGCAGGCCTCCCGGGAGAGCAAGCTGCAGCCCCTC
CCCAGCTGTGAAGTATGTGCCACGCCAAGTCCTGAGGAGGTGCAGAGCTGGGCGCAGTCTTTTGACAAGC
TGATGCACAGCCCAGCGGGACGCAGCGTGTTCCGGGCGTTCCTGCGGACAGAGTACAGCGAGGAGAACAT
GCTCTTCTGGTTGGCCTGCGAGGAGCTGAAGGCCGAGGCCAACCAGCATGTGGTAGACGAGAAGGCGAGG
CTCATCTACGAGGACTACGTATCCATCCTGTCCCCCAAGGAGGTGAGCCTGGACTCCCGTGTGCGGGAGG
GCATCAACAAGAAGATGCAGGAGCCGTCCGCACACACGTTCGACGACGCGCAGCTGCAGATCTACACGCT
CATGCACCGGGACTCCTACCCCCGCTTCCTCAGCTCTCCCACCTACCGTGCCCTGCTGCTGCAGGGGCCA
TCACAGTCCTCCTCCGAGGCCTAG

Translation (217 aa):
MPTPHEAEKQITGPEEADRPPSMSSHDTASPAAPSRNPCCLCWCCCCSCSWNQERRRAWQASRESKLQPL
PSCEVCATPSPEEVQSWAQSFDKLMHSPAGRSVFRAFLRTEYSEENMLFWLACEELKAEANQHVVDEKAR
LIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMHRDSYPRFLSSPTYRALLLQGP
SQSSSEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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