NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS1361.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1361.1 Public Homo sapiens 1 TSEN15 24 110 108 CCDS HistoryNCBI Gene:116461Re-query CCDS DB by CCDS ID:1361.1Re-query CCDS DB by GeneID:116461See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1361.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000645668.2 ENSP00000493902.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000645668.2Link to Ensembl Protein Viewer:ENSP00000493902.2Re-query CCDS DB by Nucleotide ID:ENST00000645668Re-query CCDS DB by Protein ID:ENSP00000493902
Original member Current member NCBI NM_052965.4 NP_443197.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_052965.4Link to Protein Sequence:NP_443197.1Re-query CCDS DB by Nucleotide ID:NM_052965Re-query CCDS DB by Protein ID:NP_443197Link to BLAST:NP_443197.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_443197.1 171 Q8WW01-1 171 100% 0 0

Chromosomal Locations for CCDS 1361.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 184051756 184051890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 184054354 184054435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 184054728 184054863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 184072157 184072298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 184072827 184072847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (516 nt):
ATGGAGGAGCGCGGCGATTCCGAGCCGACCCCCGGCTGCAGCGGCCTGGGTCCGGGCGGTGTTCGCGGCT
TTGGCGACGGCGGTGGAGCTCCTTCGTGGGCCCCTGAGGACGCCTGGATGGGCACTCACCCTAAGTATCT
AGAAATGATGGAATTAGATATAGGAGATGCCACCCAAGTTTATGTAGCGTTCTTGGTTTACCTGGACCTC
ATGGAAAGCAAAAGCTGGCATGAAGTAAACTGTGTAGGATTACCAGAACTCCAGCTCATCTGCCTTGTTG
GTACTGAGATAGAAGGGGAGGGGTTACAGACTGTGGTGCCTACCCCCATCACTGCTTCCCTCAGCCATAA
CAGGATAAGGGAGATCTTGAAGGCATCTCGAAAGTTGCAAGGTGATCCAGATTTGCCGATGTCTTTTACT
TTGGCCATAGTGGAGTCTGATTCTACAATAGTCTATTATAAACTTACTGATGGATTTATGCTGCCAGACC
CTCAGAATATTTCTCTTAGAAGATGA

Translation (171 aa):
MEERGDSEPTPGCSGLGPGGVRGFGDGGGAPSWAPEDAWMGTHPKYLEMMELDIGDATQVYVAFLVYLDL
MESKSWHEVNCVGLPELQLICLVGTEIEGEGLQTVVPTPITASLSHNRIREILKASRKLQGDPDLPMSFT
LAIVESDSTIVYYKLTDGFMLPDPQNISLRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH