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Report for CCDS13611.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13611.1 Public Homo sapiens 21 MIS18A 24 110 108 CCDS HistoryNCBI Gene:54069Re-query CCDS DB by CCDS ID:13611.1Re-query CCDS DB by GeneID:54069See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13611.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000290130.4 ENSP00000290130.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000290130.4Link to Ensembl Protein Viewer:ENSP00000290130.3Re-query CCDS DB by Nucleotide ID:ENST00000290130Re-query CCDS DB by Protein ID:ENSP00000290130
Original member Current member NCBI NM_018944.3 NP_061817.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018944.3Link to Protein Sequence:NP_061817.1Re-query CCDS DB by Nucleotide ID:NM_018944Re-query CCDS DB by Protein ID:NP_061817Link to BLAST:NP_061817.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061817.1 233 Q9NYP9 233 100% 0 0

Chromosomal Locations for CCDS 13611.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 32269037 32269117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 32269707 32269803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 32270407 32270529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 32274830 32274896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 32278681 32279014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (702 nt):
ATGGCAGGCGTTCGGTCACTGAGGTGTAGCAGAGGATGCGCTGGCGGCTGTGAGTGCGGCGACAAGGGCA
AATGCAGCGACTCCTCGCTGTTGGGCAAGAGACTCTCCGAAGACTCGAGCCGCCACCAGCTGTTGCAGAA
GTGGGCGAGCATGTGGAGCTCCATGAGCGAAGACGCGTCGGTGGCCGACATGGAGAGGGCGCAGCTGGAG
GAGGAGGCGGCGGCTGCGGAGGAGAGGCCGCTGGTGTTCCTGTGCTCCGGCTGCCGGCGGCCGCTGGGCG
ACTCGCTGAGCTGGGTGGCCAGCCAGGAGGACACCAACTGCATCCTGCTTCGCTGTGTTTCCTGTAATGT
TTCTGTGGATAAGGAACAGAAGCTATCCAAACGTGAAAAGGAAAATGGTTGCGTCCTTGAGACTTTGTGC
TGCGCGGGGTGCTCACTCAATCTTGGCTACGTGTACAGATGCACGCCCAAGAATCTTGATTACAAGAGAG
ACTTGTTTTGCCTCAGTGTTGAAGCCATTGAAAGTTATGTTTTAGGGTCCTCTGAAAAGCAAATTGTGTC
AGAAGATAAAGAGCTTTTTAATCTTGAAAGCAGAGTTGAAATAGAAAAGTCTCTAACACAGATGGAAGAT
GTCTTGAAAGCATTACAAATGAAGCTGTGGGAGGCCGAATCCAAATTGTCCTTTGCCACTTGTAAAAGCT
GA

Translation (233 aa):
MAGVRSLRCSRGCAGGCECGDKGKCSDSSLLGKRLSEDSSRHQLLQKWASMWSSMSEDASVADMERAQLE
EEAAAAEERPLVFLCSGCRRPLGDSLSWVASQEDTNCILLRCVSCNVSVDKEQKLSKREKENGCVLETLC
CAGCSLNLGYVYRCTPKNLDYKRDLFCLSVEAIESYVLGSSEKQIVSEDKELFNLESRVEIEKSLTQMED
VLKALQMKLWEAESKLSFATCKS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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