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Report for CCDS13666.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13666.2 Public Homo sapiens 21 SH3BGR 24 110 108 CCDS HistoryNCBI Gene:6450Re-query CCDS DB by CCDS ID:13666.2Re-query CCDS DB by GeneID:6450See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 13666.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000333634.10 ENSP00000332513.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000333634.10Link to Ensembl Protein Viewer:ENSP00000332513.5Re-query CCDS DB by Nucleotide ID:ENST00000333634Re-query CCDS DB by Protein ID:ENSP00000332513
Original member Current member NCBI NM_007341.3 NP_031367.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_007341.3Link to Protein Sequence:NP_031367.2Re-query CCDS DB by Nucleotide ID:NM_007341Re-query CCDS DB by Protein ID:NP_031367Link to BLAST:NP_031367.2

Chromosomal Locations for CCDS 13666.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 39452097 39452141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 39462375 39462560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 39475135 39475215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 39499823 39499915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 39508998 39509027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 39511680 39511775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (531 nt):
ATGGTTATCAAAGTGTTTGTTGCTACATCTTCTGGGTCCATAGCGATTAGGAAGAAACAGCAAGAAGTAG
TGGGTTTTTTGGAAGCGAATAAAATCGACTTTAAGGAATTAGATATTGCTGGAGATGAAGACAACAGGAG
GTGGATGAGAGAGAATGTTCCTGGAGAGAAAAAACCTCAAAATGGGATTCCTTTGCCTCCCCAGATCTTC
AATGAGGAGCAGTACTGTGGGGATTTTGACTCTTTCTTCTCTGCAAAAGAAGAGAATATTATTTATTCCT
TCCTTGGTTTGGCTCCTCCTCCAGACTCAAAGGGATCAGAGAAGGCTGAAGAAGGTGGAGAAACTGAGGC
ACAAAAAGAGGGCAGTGAAGATGTGGGCAACCTCCCTGAAGCCCAGGAGAAGAATGAAGAAGAAGGAGAG
ACAGCCACAGAAGAGACGGAAGAAATAGCCATGGAGGGTGCGGAAGGGGAAGCCGAGGAGGAGGAAGAAA
CTGCAGAAGGAGAAGAGCCTGGAGAAGACGAAGATTCCTAG

Translation (176 aa):
MVIKVFVATSSGSIAIRKKQQEVVGFLEANKIDFKELDIAGDEDNRRWMRENVPGEKKPQNGIPLPPQIF
NEEQYCGDFDSFFSAKEENIIYSFLGLAPPPDSKGSEKAEEGGETEAQKEGSEDVGNLPEAQEKNEEEGE
TATEETEEIAMEGAEGEAEEEEETAEGEEPGEDEDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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