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Report for CCDS13693.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13693.1 Public Homo sapiens 21 CBS 24 110 108 CCDS HistoryNCBI Gene:875Re-query CCDS DB by CCDS ID:13693.1Re-query CCDS DB by GeneID:875See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13693.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000352178.9 ENSP00000344460.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000352178.9Link to Ensembl Protein Viewer:ENSP00000344460.5Re-query CCDS DB by Nucleotide ID:ENST00000352178Re-query CCDS DB by Protein ID:ENSP00000344460
Original member Current member EBI ENST00000359624.7 ENSP00000352643.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000359624.7Link to Ensembl Protein Viewer:ENSP00000352643.3Re-query CCDS DB by Nucleotide ID:ENST00000359624Re-query CCDS DB by Protein ID:ENSP00000352643
Original member Current member EBI ENST00000398158.5 ENSP00000381225.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000398158.5Link to Ensembl Protein Viewer:ENSP00000381225.1Re-query CCDS DB by Nucleotide ID:ENST00000398158Re-query CCDS DB by Protein ID:ENSP00000381225
Original member Current member EBI ENST00000398165.8 ENSP00000381231.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000398165.8Link to Ensembl Protein Viewer:ENSP00000381231.4Re-query CCDS DB by Nucleotide ID:ENST00000398165Re-query CCDS DB by Protein ID:ENSP00000381231
Original member Current member NCBI NM_000071.3 NP_000062.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000071.3Link to Protein Sequence:NP_000062.1Re-query CCDS DB by Nucleotide ID:NM_000071Re-query CCDS DB by Protein ID:NP_000062Link to BLAST:NP_000062.1
Original member Current member NCBI NM_001178008.3 NP_001171479.1 Accepted alive Link to Nucleotide Sequence:NM_001178008.3Link to Protein Sequence:NP_001171479.1Re-query CCDS DB by Nucleotide ID:NM_001178008Re-query CCDS DB by Protein ID:NP_001171479Link to BLAST:NP_001171479.1
Original member Current member NCBI NM_001178009.3 NP_001171480.1 Accepted alive Link to Nucleotide Sequence:NM_001178009.3Link to Protein Sequence:NP_001171480.1Re-query CCDS DB by Nucleotide ID:NM_001178009Re-query CCDS DB by Protein ID:NP_001171480Link to BLAST:NP_001171480.1
Original member Current member NCBI NM_001320298.2 NP_001307227.1 Accepted alive Link to Nucleotide Sequence:NM_001320298.2Link to Protein Sequence:NP_001307227.1Re-query CCDS DB by Nucleotide ID:NM_001320298Re-query CCDS DB by Protein ID:NP_001307227Link to BLAST:NP_001307227.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000062.1 551 P35520-1 551 100% 0 0
NP_001171479.1 551 P35520-1 551 100% 0 0
NP_001171480.1 551 P35520-1 551 100% 0 0
NP_001307227.1 551 P35520-1 551 100% 0 0

Chromosomal Locations for CCDS 13693.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 43053880 43053983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43056803 43056887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43058145 43058253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43058834 43058968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43059226 43059303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43060441 43060546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43062311 43062395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43062953 43063078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43063900 43063991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43065203 43065272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43065387 43065521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43065616 43065695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43066243 43066377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43068509 43068615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43071985 43072193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1656 nt):
ATGCCTTCTGAGACCCCCCAGGCAGAAGTGGGGCCCACAGGCTGCCCCCACCGCTCAGGGCCACACTCGG
CGAAGGGGAGCCTGGAGAAGGGGTCCCCAGAGGATAAGGAAGCCAAGGAGCCCCTGTGGATCCGGCCCGA
TGCTCCGAGCAGGTGCACCTGGCAGCTGGGCCGGCCTGCCTCCGAGTCCCCACATCACCACACTGCCCCG
GCAAAATCTCCAAAAATCTTGCCAGATATTCTGAAGAAAATCGGGGACACCCCTATGGTCAGAATCAACA
AGATTGGGAAGAAGTTCGGCCTGAAGTGTGAGCTCTTGGCCAAGTGTGAGTTCTTCAACGCGGGCGGGAG
CGTGAAGGACCGCATCAGCCTGCGGATGATTGAGGATGCTGAGCGCGACGGGACGCTGAAGCCCGGGGAC
ACGATTATCGAGCCGACATCCGGGAACACCGGGATCGGGCTGGCCCTGGCTGCGGCAGTGAGGGGCTATC
GCTGCATCATCGTGATGCCAGAGAAGATGAGCTCCGAGAAGGTGGACGTGCTGCGGGCACTGGGGGCTGA
GATTGTGAGGACGCCCACCAATGCCAGGTTCGACTCCCCGGAGTCACACGTGGGGGTGGCCTGGCGGCTG
AAGAACGAAATCCCCAATTCTCACATCCTAGACCAGTACCGCAACGCCAGCAACCCCCTGGCTCACTACG
ACACCACCGCTGATGAGATCCTGCAGCAGTGTGATGGGAAGCTGGACATGCTGGTGGCTTCAGTGGGCAC
GGGCGGCACCATCACGGGCATTGCCAGGAAGCTGAAGGAGAAGTGTCCTGGATGCAGGATCATTGGGGTG
GATCCCGAAGGGTCCATCCTCGCAGAGCCGGAGGAGCTGAACCAGACGGAGCAGACAACCTACGAGGTGG
AAGGGATCGGCTACGACTTCATCCCCACGGTGCTGGACAGGACGGTGGTGGACAAGTGGTTCAAGAGCAA
CGATGAGGAGGCGTTCACCTTTGCCCGCATGCTGATCGCGCAAGAGGGGCTGCTGTGCGGTGGCAGTGCT
GGCAGCACGGTGGCGGTGGCCGTGAAGGCCGCGCAGGAGCTGCAGGAGGGCCAGCGCTGCGTGGTCATTC
TGCCCGACTCAGTGCGGAACTACATGACCAAGTTCCTGAGCGACAGGTGGATGCTGCAGAAGGGCTTTCT
GAAGGAGGAGGACCTCACGGAGAAGAAGCCCTGGTGGTGGCACCTCCGTGTTCAGGAGCTGGGCCTGTCA
GCCCCGCTGACCGTGCTCCCGACCATCACCTGTGGGCACACCATCGAGATCCTCCGGGAGAAGGGCTTCG
ACCAGGCGCCCGTGGTGGATGAGGCGGGGGTAATCCTGGGAATGGTGACGCTTGGGAACATGCTCTCGTC
CCTGCTTGCCGGGAAGGTGCAGCCGTCAGACCAAGTTGGCAAAGTCATCTACAAGCAGTTCAAACAGATC
CGCCTCACGGACACGCTGGGCAGGCTCTCGCACATCCTGGAGATGGACCACTTCGCCCTGGTGGTGCACG
AGCAGATCCAGTACCACAGCACCGGGAAGTCCAGTCAGCGGCAGATGGTGTTCGGGGTGGTCACCGCCAT
TGACTTGCTGAACTTCGTGGCCGCCCAGGAGCGGGACCAGAAGTGA

Translation (551 aa):
MPSETPQAEVGPTGCPHRSGPHSAKGSLEKGSPEDKEAKEPLWIRPDAPSRCTWQLGRPASESPHHHTAP
AKSPKILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKPGD
TIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRL
KNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGV
DPEGSILAEPEELNQTEQTTYEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSA
GSTVAVAVKAAQELQEGQRCVVILPDSVRNYMTKFLSDRWMLQKGFLKEEDLTEKKPWWWHLRVQELGLS
APLTVLPTITCGHTIEILREKGFDQAPVVDEAGVILGMVTLGNMLSSLLAGKVQPSDQVGKVIYKQFKQI
RLTDTLGRLSHILEMDHFALVVHEQIQYHSTGKSSQRQMVFGVVTAIDLLNFVAAQERDQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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