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Report for CCDS13846.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13846.1 Public Homo sapiens 22 CCDC117 24 110 108 CCDS HistoryNCBI Gene:150275Re-query CCDS DB by CCDS ID:13846.1Re-query CCDS DB by GeneID:150275See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13846.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000249064.9 ENSP00000249064.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000249064.9Link to Ensembl Protein Viewer:ENSP00000249064.4Re-query CCDS DB by Nucleotide ID:ENST00000249064Re-query CCDS DB by Protein ID:ENSP00000249064
Original member Current member NCBI NM_173510.4 NP_775781.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173510.4Link to Protein Sequence:NP_775781.1Re-query CCDS DB by Nucleotide ID:NM_173510Re-query CCDS DB by Protein ID:NP_775781Link to BLAST:NP_775781.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775781.1 279 Q8IWD4-1 279 100% 0 0

Chromosomal Locations for CCDS 13846.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 28772850 28773034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 28773725 28773778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 28780948 28781172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 28783508 28783645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 28786089 28786326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (840 nt):
ATGGCTGCGCTCGGCCGGCCCTTCAGCGGCCTCCCTCTGAGCGGCGGCTCGGACTTCCTGCAGCCGCCGC
AGCCGGCCTTCCCCGGCCGGGCCTTCCCGCCGGGGGCTGACGGCGCCGAGTTGGCCCCGCGGCCGGGACC
TCGCGCAGTCCCTAGCAGTCCCGCTGGGAGTGCGGCGCGCGGACGTGTTTCTGTTCACTGTAAAAAGAAA
CACAAGCGAGAGGAGGAGGAGGATGATGATTGTCCAGTAAGAAAGAAAAGGATAACTGAAGCAGAGCTCT
GTGCTGGTCCTAATGACTGGATTCTTTGTGCACATCAGGATGTAGAGGGGCATGGAGTAAATCCCAGTGT
TAGTGGCCTTTCCATACCTGGGATATTAGATGTTATTTGTGAAGAAATGGATCAGACAACTGGAGAACCA
CAGTGTGAAGTTGCCCGAAGGAAGCTTCAGGAGATTGAGGACAGGATAATTGATGAAGATGAAGAAGTTG
AAGCTGACAGAAATGTTAACCATCTCCCCAGTCTTGTCCTTTCTGATACCATGAAAACAGGTTTGAAGAG
GGAATTTGATGAAGTTTTTACAAAGAAAATGATTGAGTCTATGAGCCGTCCTTCCATGGAGCTTGTTCTC
TGGAAACCCCTCCCTGAACTCCTTTCTGATAAGCCAAAGCCATCCTCTAATACTAAGAACTATACAGGAG
AGAGCCAAGCTAAGCATGTAGCTGCTGGCACTGCCTTCCCTCAGAGAACTGAACTGTTTTCGGAACCTCG
GCCAACAGGGATGTCTCTTTATAATAGTTTGGAGACAGCTACTAGCACAGAAGAAGAGATGGAACTCTAG

Translation (279 aa):
MAALGRPFSGLPLSGGSDFLQPPQPAFPGRAFPPGADGAELAPRPGPRAVPSSPAGSAARGRVSVHCKKK
HKREEEEDDDCPVRKKRITEAELCAGPNDWILCAHQDVEGHGVNPSVSGLSIPGILDVICEEMDQTTGEP
QCEVARRKLQEIEDRIIDEDEEVEADRNVNHLPSLVLSDTMKTGLKREFDEVFTKKMIESMSRPSMELVL
WKPLPELLSDKPKPSSNTKNYTGESQAKHVAAGTAFPQRTELFSEPRPTGMSLYNSLETATSTEEEMEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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