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Report for CCDS13868.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13868.1 Public Homo sapiens 22 ZMAT5 24 110 108 CCDS HistoryNCBI Gene:55954Re-query CCDS DB by CCDS ID:13868.1Re-query CCDS DB by GeneID:55954See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13868.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000344318.4 ENSP00000344241.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000344318.4Link to Ensembl Protein Viewer:ENSP00000344241.3Re-query CCDS DB by Nucleotide ID:ENST00000344318Re-query CCDS DB by Protein ID:ENSP00000344241
Original member Current member NCBI NM_001003692.2 NP_001003692.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001003692.2Link to Protein Sequence:NP_001003692.1Re-query CCDS DB by Nucleotide ID:NM_001003692Re-query CCDS DB by Protein ID:NP_001003692Link to BLAST:NP_001003692.1
Original member Current member NCBI NM_001318129.2 NP_001305058.1 Accepted alive Link to Nucleotide Sequence:NM_001318129.2Link to Protein Sequence:NP_001305058.1Re-query CCDS DB by Nucleotide ID:NM_001318129Re-query CCDS DB by Protein ID:NP_001305058Link to BLAST:NP_001305058.1
Original member Current member NCBI NM_019103.3 NP_061976.1 Accepted alive Link to Nucleotide Sequence:NM_019103.3Link to Protein Sequence:NP_061976.1Re-query CCDS DB by Nucleotide ID:NM_019103Re-query CCDS DB by Protein ID:NP_061976Link to BLAST:NP_061976.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001003692.1 170 Q9UDW3 170 100% 0 0
NP_001305058.1 170 Q9UDW3 170 100% 0 0
NP_061976.1 170 Q9UDW3 170 100% 0 0

Chromosomal Locations for CCDS 13868.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 29731225 29731354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 29738330 29738441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 29740650 29740730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 29742418 29742480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 29748418 29748544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (513 nt):
ATGGGGAAGCGATACTTCTGTGACTACTGCGACCGCTCCTTCCAGGACAACCTCCACAACCGCAAGAAGC
ACCTGAACGGGCTGCAGCACCTCAAGGCCAAGAAGGTCTGGTACGACATGTTCCGAGATGCAGCTGCCAT
CTTGCTGGATGAGCAGAACAAGCGGCCCTGCAGGAAGTTTCTACTGACAGGCCAGTGCGACTTTGGCTCC
AACTGCAGATTTTCCCACATGTCAGAGCGAGACCTGCAGGAGCTGAGCATCCAGGTGGAGGAGGAGAGGC
GAGCCAGGGAGTGGCTACTAGATGCTCCTGAGCTCCCCGAGGGCCATCTGGAGGACTGGCTGGAGAAGAG
AGCCAAGCGGCTGAGCTCAGCCCCAAGTAGCAGGGCTGAACCCATCAGAACCACTGTCTTCCAGTACCCC
GTGGGCTGGCCACCAGTTCAGGAGCTGCCTCCATCCCTGCGGGCACCCCCACCTGGGGGGTGGCCTCTGC
AGCCCAGAGTCCAGTGGGGCTGA

Translation (170 aa):
MGKRYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAILLDEQNKRPCRKFLLTGQCDFGS
NCRFSHMSERDLQELSIQVEEERRAREWLLDAPELPEGHLEDWLEKRAKRLSSAPSSRAEPIRTTVFQYP
VGWPPVQELPPSLRAPPPGGWPLQPRVQWG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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