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Report for CCDS13905.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13905.1 Public Homo sapiens 22 RTCB 24 110 108 CCDS HistoryNCBI Gene:51493Re-query CCDS DB by CCDS ID:13905.1Re-query CCDS DB by GeneID:51493See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13905.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000216038.6 ENSP00000216038.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000216038.6Link to Ensembl Protein Viewer:ENSP00000216038.5Re-query CCDS DB by Nucleotide ID:ENST00000216038Re-query CCDS DB by Protein ID:ENSP00000216038
Original member Current member NCBI NM_014306.5 NP_055121.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014306.5Link to Protein Sequence:NP_055121.1Re-query CCDS DB by Nucleotide ID:NM_014306Re-query CCDS DB by Protein ID:NP_055121Link to BLAST:NP_055121.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055121.1 505 Q9Y3I0 505 100% 0 0

Chromosomal Locations for CCDS 13905.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 32387992 32388099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 32392240 32392359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 32393892 32394002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 32395026 32395214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 32396074 32396249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 32397941 32398100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 32399603 32399759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 32401747 32401903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 32406662 32406761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 32408175 32408242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 32408755 32408833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 32412064 32412156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1518 nt):
ATGAGTCGCAGCTATAATGATGAGCTGCAGTTCTTGGAGAAGATCAATAAAAACTGCTGGAGGATCAAGA
AGGGCTTCGTGCCCAACATGCAGGTTGAAGGTGTTTTCTATGTGAATGATGCTCTGGAGAAATTGATGTT
TGAGGAATTAAGGAATGCCTGTCGAGGTGGTGGTGTTGGTGGCTTCCTGCCAGCCATGAAACAGATTGGC
AATGTGGCAGCCCTGCCTGGAATTGTTCATCGATCTATTGGGCTTCCTGATGTCCATTCAGGATATGGGT
TTGCTATTGGGAACATGGCAGCCTTTGATATGAATGACCCTGAAGCAGTAGTATCCCCAGGTGGTGTCGG
GTTTGACATCAACTGTGGTGTCCGCTTGCTAAGAACCAATTTAGATGAAAGTGATGTCCAGCCTGTGAAG
GAGCAACTTGCCCAAGCTATGTTTGACCACATTCCTGTTGGGGTGGGGTCAAAAGGTGTCATCCCAATGA
ATGCCAAAGACTTGGAGGAGGCCTTGGAGATGGGGGTGGACTGGTCCTTAAGAGAAGGGTATGCCTGGGC
TGAAGACAAGGAGCACTGCGAGGAGTACGGAAGGATGCTGCAGGCTGACCCCAATAAAGTTTCTGCAAGG
GCGAAGAAAAGAGGCCTTCCTCAGTTGGGGACCCTGGGAGCAGGCAACCATTATGCAGAAATCCAGGTTG
TGGATGAGATTTTCAATGAGTATGCTGCTAAAAAAATGGGCATCGACCATAAGGGACAGGTGTGTGTGAT
GATCCACAGTGGAAGCAGAGGCTTGGGCCACCAAGTAGCCACAGATGCGCTGGTAGCTATGGAGAAGGCC
ATGAAGAGAGACAAGATTATAGTCAATGATCGGCAGTTGGCTTGTGCTCGAATCGCTTCCCCAGAGGGTC
AAGACTATCTGAAGGGAATGGCAGCTGCTGGGAACTATGCCTGGGTCAACCGCTCTTCCATGACCTTCTT
AACCCGTCAGGCTTTCGCCAAGGTCTTCAACACAACCCCTGATGACTTGGACCTACATGTGATCTATGAT
GTTTCTCACAACATTGCCAAAGTGGAGCAGCATGTGGTGGACGGAAAGGAACGGACACTGTTAGTACACA
GGAAGGGATCCACCCGCGCTTTCCCTCCTCACCATCCCCTCATTGCTGTTGATTACCAACTCACTGGACA
GCCAGTGCTCATTGGTGGCACCATGGGAACCTGTAGTTATGTTCTTACTGGCACTGAACAGGGCATGACT
GAGACCTTTGGAACAACCTGTCATGGAGCGGGCCGTGCATTGTCCCGAGCAAAATCTCGACGTAATTTAG
ATTTCCAGGATGTCTTAGACAAATTGGCAGATATGGGAATTGCGATCCGTGTTGCCTCACCCAAACTGGT
TATGGAAGAGGCTCCTGAGTCCTATAAGAATGTGACAGATGTGGTAAATACCTGCCATGATGCTGGAATC
AGCAAGAAAGCCATTAAACTGAGACCAATTGCTGTGATCAAAGGATAG

Translation (505 aa):
MSRSYNDELQFLEKINKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIG
NVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVK
EQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNKVSAR
AKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKA
MKRDKIIVNDRQLACARIASPEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYD
VSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGI
SKKAIKLRPIAVIKG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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