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Report for CCDS13913.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13913.1 Public Homo sapiens 22 TOM1 24 110 108 CCDS HistoryNCBI Gene:10043Re-query CCDS DB by CCDS ID:13913.1Re-query CCDS DB by GeneID:10043See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13913.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000449058.7 ENSP00000394466.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000449058.7Link to Ensembl Protein Viewer:ENSP00000394466.2Re-query CCDS DB by Nucleotide ID:ENST00000449058Re-query CCDS DB by Protein ID:ENSP00000394466
Original member Current member NCBI NM_005488.3 NP_005479.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005488.3Link to Protein Sequence:NP_005479.1Re-query CCDS DB by Nucleotide ID:NM_005488Re-query CCDS DB by Protein ID:NP_005479Link to BLAST:NP_005479.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005479.1 492 O60784-1 492 100% 0 0

Chromosomal Locations for CCDS 13913.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 35299929 35299980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 35317877 35317961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 35321959 35322037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 35323028 35323177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 35323496 35323630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 35323768 35323914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 35327271 35327387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 35330347 35330480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 35332981 35333014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 35333404 35333497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 35334328 35334448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 35338713 35338788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 35345725 35345784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 35346930 35346969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 35347055 35347209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1479 nt):
ATGGACTTTCTCCTGGGGAACCCGTTCAGCTCTCCAGTGGGACAGCGCATCGAGAAAGCCACAGATGGCT
CCCTGCAGAGCGAGGACTGGGCCCTCAACATGGAGATCTGCGACATCATCAACGAGACGGAGGAAGGTCC
CAAAGATGCCCTCCGAGCAGTAAAGAAGAGAATCGTGGGGAATAAGAACTTCCACGAGGTGATGCTGGCT
CTCACAGTCTTAGAAACCTGTGTCAAGAACTGCGGGCACCGCTTCCACGTGCTGGTGGCCAGCCAGGACT
TCGTGGAGAGTGTGCTGGTGAGGACCATCCTGCCCAAGAACAACCCACCCACCATCGTGCATGACAAAGT
GCTCAACCTCATCCAGTCCTGGGCTGACGCGTTCCGCAGCTCGCCCGATCTGACAGGTGTGGTCACCATC
TATGAGGACCTGCGGAGGAAAGGCCTGGAGTTCCCCATGACTGACCTGGACATGCTGTCACCCATCCACA
CACCCCAGAGGACCGTGTTCAACTCAGAGACACAATCAGGACAGGATTCTGTGGGCACTGACTCCAGCCA
GCAAGAGGACTCTGGCCAGCATGCTGCCCCTCTGCCCGCCCCGCCCATACTCTCCGGTGACACGCCCATA
GCACCAACCCCGGAACAGATTGGGAAGCTGCGCAGTGAGCTGGAGATGGTGAGTGGGAACGTGAGGGTGA
TGTCGGAGATGCTGACGGAGCTGGTGCCCACCCAGGCCGAGCCCGCAGACCTGGAGCTGCTGCAGGAGCT
CAACCGCACGTGCCGAGCCATGCAGCAGCGGGTCCTGGAGCTCATCCCTCAGATCGCCAATGAGCAGCTG
ACAGAGGAGCTGCTCATCGTCAATGACAATCTCAACAATGTGTTCCTGCGCCATGAACGGTTTGAACGGT
TCCGAACAGGCCAGACCACCAAGGCCCCAAGTGAGGCCGAGCCGGCAGCTGACCTGATCGACATGGGCCC
TGACCCAGCAGCCACCGGCAACCTCTCATCCCAGCTGGCAGGAATGAACCTGGGCTCCAGCAGTGTGAGA
GCTGGCCTGCAGTCTCTGGAGGCCTCTGGTCGACTGGAAGATGAGTTTGACATGTTTGCGCTGACACGGG
GCAGCTCACTGGCTGACCAACGGAAAGAGGTAAAATACGAAGCCCCCCAAGCAACAGACGGCCTGGCTGG
AGCCCTGGACGCCCGGCAGCAGAGCACTGGCGCGATCCCAGTCACCCAGGCCTGCCTCATGGAGGACATC
GAGCAGTGGCTGTCCACTGACGTGGGTAATGATGCGGAAGAGCCTAAGGGGGTCACCAGCGAAGAATTTG
ACAAATTCCTGGAAGAACGGGCCAAAGCCGCGGACCGATTGCCCAACCTCTCCAGCCCCTCAGCTGAGGG
GCCCCCGGGTCCCCCATCTGGCCCAGCGCCCCGGAAGAAGACCCAGGAGAAAGATGATGACATGCTGTTT
GCCTTATGA

Translation (492 aa):
MDFLLGNPFSSPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLA
LTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFRSSPDLTGVVTI
YEDLRRKGLEFPMTDLDMLSPIHTPQRTVFNSETQSGQDSVGTDSSQQEDSGQHAAPLPAPPILSGDTPI
APTPEQIGKLRSELEMVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQQRVLELIPQIANEQL
TEELLIVNDNLNNVFLRHERFERFRTGQTTKAPSEAEPAADLIDMGPDPAATGNLSSQLAGMNLGSSSVR
AGLQSLEASGRLEDEFDMFALTRGSSLADQRKEVKYEAPQATDGLAGALDARQQSTGAIPVTQACLMEDI
EQWLSTDVGNDAEEPKGVTSEEFDKFLEERAKAADRLPNLSSPSAEGPPGPPSGPAPRKKTQEKDDDMLF
AL


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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