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Report for CCDS13924.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13924.1 Public Homo sapiens 22 APOL3 24 110 108 CCDS HistoryNCBI Gene:80833Re-query CCDS DB by CCDS ID:13924.1Re-query CCDS DB by GeneID:80833See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13924.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361710.6 ENSP00000355164.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000361710.6Link to Ensembl Protein Viewer:ENSP00000355164.2Re-query CCDS DB by Nucleotide ID:ENST00000361710Re-query CCDS DB by Protein ID:ENSP00000355164
Original member Current member EBI ENST00000397287.6 ENSP00000380456.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397287.6Link to Ensembl Protein Viewer:ENSP00000380456.2Re-query CCDS DB by Nucleotide ID:ENST00000397287Re-query CCDS DB by Protein ID:ENSP00000380456
Original member Current member EBI ENST00000397293.6 ENSP00000380461.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397293.6Link to Ensembl Protein Viewer:ENSP00000380461.3Re-query CCDS DB by Nucleotide ID:ENST00000397293Re-query CCDS DB by Protein ID:ENSP00000380461
Original member Current member NCBI NM_001393606.1 NP_001380535.1 Accepted alive Link to Nucleotide Sequence:NM_001393606.1Link to Protein Sequence:NP_001380535.1Re-query CCDS DB by Nucleotide ID:NM_001393606Re-query CCDS DB by Protein ID:NP_001380535Link to BLAST:NP_001380535.1
Original member Current member NCBI NM_001393607.1 NP_001380536.1 Accepted alive Link to Nucleotide Sequence:NM_001393607.1Link to Protein Sequence:NP_001380536.1Re-query CCDS DB by Nucleotide ID:NM_001393607Re-query CCDS DB by Protein ID:NP_001380536Link to BLAST:NP_001380536.1
Original member Current member NCBI NM_001393608.1 NP_001380537.1 Accepted alive Link to Nucleotide Sequence:NM_001393608.1Link to Protein Sequence:NP_001380537.1Re-query CCDS DB by Nucleotide ID:NM_001393608Re-query CCDS DB by Protein ID:NP_001380537Link to BLAST:NP_001380537.1
Original member Current member NCBI NM_001393609.1 NP_001380538.1 Accepted alive Link to Nucleotide Sequence:NM_001393609.1Link to Protein Sequence:NP_001380538.1Re-query CCDS DB by Nucleotide ID:NM_001393609Re-query CCDS DB by Protein ID:NP_001380538Link to BLAST:NP_001380538.1
Original member Current member NCBI NM_145641.3 NP_663616.1 Accepted alive Link to Nucleotide Sequence:NM_145641.3Link to Protein Sequence:NP_663616.1Re-query CCDS DB by Nucleotide ID:NM_145641Re-query CCDS DB by Protein ID:NP_663616Link to BLAST:NP_663616.1
Original member Current member NCBI NM_145642.3 NP_663617.1 Accepted alive Link to Nucleotide Sequence:NM_145642.3Link to Protein Sequence:NP_663617.1Re-query CCDS DB by Nucleotide ID:NM_145642Re-query CCDS DB by Protein ID:NP_663617Link to BLAST:NP_663617.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001380535.1 202 O95236-3 202 100% 0 0
NP_001380536.1 202 O95236-3 202 100% 0 0
NP_001380537.1 202 O95236-3 202 100% 0 0
NP_001380538.1 202 O95236-3 202 100% 0 0
NP_663616.1 202 O95236-3 202 100% 0 0
NP_663617.1 202 O95236-3 202 100% 0 0

Chromosomal Locations for CCDS 13924.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 36141200 36141808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (609 nt):
ATGTCCCTTGCTGGTCTTGTTTTGGCACCATTTACAGCAGGGACGAGTCTGGCCCTTACTGCAGCTGGGG
TAGGGCTGGGAGCAGCGTCTGCTGTGACTGGGATCACCACCAGCATCGTGGAGCACTCATACACATCATC
AGCAGAAGCTGAAGCCAGCAGGCTGACTGCAACCAGCATTGACCGATTGAAGGTATTTAAGGAAGTTATG
CGTGACATCACACCCAACTTACTTTCCCTTCTTAATAATTATTACGAAGCCACACAAACCATTGGGAGTG
AAATCCGTGCCATCAGGCAAGCCAGAGCCAGGGCCCGACTCCCTGTGACCACCTGGCGAATCTCAGCTGG
AAGTGGTGGTCAAGCAGAGAGAACGATTGCAGGCACCACCCGGGCAGTGAGCAGAGGAGCCCGGATCCTG
AGTGCGACCACTTCAGGCATCTTCCTTGCACTGGATGTGGTCAACCTTGTATACGAGTCAAAGCACTTGC
ATGAGGGGGCAAAGTCTGCATCTGCTGAGGAGCTGAGGCGGCAGGCTCAGGAGCTGGAGGAGAATCTAAT
GGAGCTCACTCAGATCTATCAGCGTCTGAATCCATGCCATACCCACTGA

Translation (202 aa):
MSLAGLVLAPFTAGTSLALTAAGVGLGAASAVTGITTSIVEHSYTSSAEAEASRLTATSIDRLKVFKEVM
RDITPNLLSLLNNYYEATQTIGSEIRAIRQARARARLPVTTWRISAGSGGQAERTIAGTTRAVSRGARIL
SATTSGIFLALDVVNLVYESKHLHEGAKSASAEELRRQAQELEENLMELTQIYQRLNPCHTH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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