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Report for CCDS13974.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13974.1 Public Homo sapiens 22 CBY1 24 110 108 CCDS HistoryNCBI Gene:25776Re-query CCDS DB by CCDS ID:13974.1Re-query CCDS DB by GeneID:25776See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 13974.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000216029.8 ENSP00000216029.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000216029.8Link to Ensembl Protein Viewer:ENSP00000216029.3Re-query CCDS DB by Nucleotide ID:ENST00000216029Re-query CCDS DB by Protein ID:ENSP00000216029
Original member Current member EBI ENST00000396811.6 ENSP00000380026.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396811.6Link to Ensembl Protein Viewer:ENSP00000380026.2Re-query CCDS DB by Nucleotide ID:ENST00000396811Re-query CCDS DB by Protein ID:ENSP00000380026
Original member Current member EBI ENST00000416285.6 ENSP00000412260.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000416285.6Link to Ensembl Protein Viewer:ENSP00000412260.2Re-query CCDS DB by Nucleotide ID:ENST00000416285Re-query CCDS DB by Protein ID:ENSP00000412260
Original member Current member EBI ENST00000411557.6 ENSP00000413934.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000411557.6Link to Ensembl Protein Viewer:ENSP00000413934.2Re-query CCDS DB by Nucleotide ID:ENST00000411557Re-query CCDS DB by Protein ID:ENSP00000413934
Original member Current member NCBI NM_001002880.4 NP_001002880.3 Accepted alive Link to Nucleotide Sequence:NM_001002880.4Link to Protein Sequence:NP_001002880.3Re-query CCDS DB by Nucleotide ID:NM_001002880Re-query CCDS DB by Protein ID:NP_001002880Link to BLAST:NP_001002880.3
Original member Current member NCBI NM_015373.4 NP_056188.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015373.4Link to Protein Sequence:NP_056188.1Re-query CCDS DB by Nucleotide ID:NM_015373Re-query CCDS DB by Protein ID:NP_056188Link to BLAST:NP_056188.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001002880.3 126 Q9Y3M2 126 100% 0 0
NP_056188.1 126 Q9Y3M2 126 100% 0 0

Chromosomal Locations for CCDS 13974.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 38668055 38668132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38670884 38670989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38671070 38671188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38673159 38673236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (381 nt):
ATGCCTTTCTTTGGGAATACGTTCAGTCCGAAGAAGACACCTCCTCGGAAGTCGGCATCTCTCTCCAACC
TGCATTCTTTGGATCGATCAACCCGGGAGGTGGAGCTGGGCTTGGAATACGGATCCCCGACTATGAACCT
GGCAGGGCAAAGCCTGAAGTTTGAAAATGGCCAGTGGATAGCAGAGACAGGGGTTAGTGGCGGTGTGGAC
CGGAGGGAGGTTCAGCGCCTTCGCAGGCGGAACCAGCAGTTGGAGGAAGAGAACAATCTCTTGCGGCTGA
AAGTGGACATCTTATTAGACATGCTTTCAGAGTCCACTGCTGAATCCCACTTAATGGAGAAGGAACTGGA
TGAACTGAGGATCAGCCGGAAGAGAAAATGA

Translation (126 aa):
MPFFGNTFSPKKTPPRKSASLSNLHSLDRSTREVELGLEYGSPTMNLAGQSLKFENGQWIAETGVSGGVD
RREVQRLRRRNQQLEEENNLLRLKVDILLDMLSESTAESHLMEKELDELRISRKRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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