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Report for CCDS14000.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14000.2 Public Homo sapiens 22 FAM83F 24 110 108 CCDS HistoryNCBI Gene:113828Re-query CCDS DB by CCDS ID:14000.2Re-query CCDS DB by GeneID:113828See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 14000.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000333407.11 ENSP00000330432.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000333407.11Link to Ensembl Protein Viewer:ENSP00000330432.5Re-query CCDS DB by Nucleotide ID:ENST00000333407Re-query CCDS DB by Protein ID:ENSP00000330432
Original member Current member NCBI NM_138435.4 NP_612444.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_138435.4Link to Protein Sequence:NP_612444.2Re-query CCDS DB by Nucleotide ID:NM_138435Re-query CCDS DB by Protein ID:NP_612444Link to BLAST:NP_612444.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_612444.2 500 Q8NEG4-1 500 100% 0 0

Chromosomal Locations for CCDS 14000.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 39995043 39995531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40019168 40019335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40019887 40020008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40021290 40021963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40029516 40029565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1503 nt):
ATGGCCGAGTCCCAGCTGAACTGCCTGGACGAGGCGCACGTGAACGAGAAGGTGACCGAGGCGCAGGCCG
CCTTCTACTACTGCGAGCGGCGGCGGGCCGCGCTGGAGGCGCTGCTGGGCGGCGGCGAGCAGGCCTACCG
CGAGCGGCTCAAGGAGGAGCAGCTGCGGGACTTCCTCTCCAGCCCGGAGCGCCAGGCCCTGCGGGCCGCC
TGGAGCCCCTACGAGGACGCCGTCCCCGCCGCCAACGCCCGGGGCAAGAGCAAGGCCAAGGCCAAGGCCC
CCGCGCCGGCGCCGGCTGAGTCCGGCGAGTCCCTGGCCTACTGGCCCGACCGTTCCGACACCGAGGTGCC
TCCTCTGGACCTGGGCTGGACGGACACTGGTTTCTACCGCGGCGTGAGCCGGGTCACGCTCTTCACCCAC
CCGCCCAAGGACGAGAAGGCGCCGCACCTCAAGCAGGTGGTCAGGCAGATGATCCAACAGGCCCAGAAGG
TCATTGCTGTGGTCATGGACCTCTTCACTGATGGTGATATCTTTCAAGACATTGTGGATGCTGCCTGTAA
GCGCCGGGTCCCAGTGTACATCATCCTGGACGAGGCAGGAGTGAAGTATTTCCTGGAGATGTGTCAGGAC
CTGCAGCTCACTGACTTCCGGATTCGGAACATCCGTGTCCGCTCTGTGACAGGCGTCGGCTTCTACATGC
CCATGGGGAGGATCAAGGGGACCCTGTCATCAAGGTTCCTGATGGTGGACGGTGACAAAGTGGCCACTGG
ATCTTACAGGTTCACCTGGAGTTCCTCCCATGTGGACAGAAACCTCCTCCTGCTCCTGACAGGACAGAAC
GTAGAGCCCTTTGACACGGAGTTCCGGGAGCTGTACGCCATCTCCGAGGAGGTGGACTTGTACCGGCAGC
TGAGCCTGGCGGGCAGGGTTGGCCTCCATTACTCCTCCACTGTGGCTCGAAAGCTTATCAACCCCAAGTA
CGCCTTGGTGTCAGGCTGCCGCCACCCGCCTGGGGAGATGATGCGCTGGGCTGCCCGGCAACAGCGGGAG
GCGGGCGGCAACCCGGAGGGGCAGGAGGAGGGCGCCAGCGGTGGCGAGTCGGCCTGGCGCCTGGAGAGCT
TCCTGAAAGACCTGGTTACGGTGGAGCAGGTGCTGCCCCCCGTGGAGCCCATCCCCTTGGGAGAGCTGAG
CCAGAAGGATGGCAGGATGGTCTCTCACATGCACAGAGACCTGAAGCCCAAATCCCGAGAGGCACCCAGC
CGAAACGGCATGGGAGAAGCGGCCCGGGGGGAGGCCGCCCCCGCCAGGCGCTTCAGCAGCAGGCTCTTCA
GTCGCCGAGCCAAGAGGCCTGCGGCGCCCAATGGCATGGCCAGCTCTGTCTCCACCGAGACCTCTGAAGT
GGAGTTTCTGACGGGGAAGAGGCCCAACGAGAATTCCAGTGCTGACATCTCAGGTAAAACAAGTCCCAGT
TCTGCCAAGCCTAGCAACTGTGTGATTTCCTGA

Translation (500 aa):
MAESQLNCLDEAHVNEKVTEAQAAFYYCERRRAALEALLGGGEQAYRERLKEEQLRDFLSSPERQALRAA
WSPYEDAVPAANARGKSKAKAKAPAPAPAESGESLAYWPDRSDTEVPPLDLGWTDTGFYRGVSRVTLFTH
PPKDEKAPHLKQVVRQMIQQAQKVIAVVMDLFTDGDIFQDIVDAACKRRVPVYIILDEAGVKYFLEMCQD
LQLTDFRIRNIRVRSVTGVGFYMPMGRIKGTLSSRFLMVDGDKVATGSYRFTWSSSHVDRNLLLLLTGQN
VEPFDTEFRELYAISEEVDLYRQLSLAGRVGLHYSSTVARKLINPKYALVSGCRHPPGEMMRWAARQQRE
AGGNPEGQEEGASGGESAWRLESFLKDLVTVEQVLPPVEPIPLGELSQKDGRMVSHMHRDLKPKSREAPS
RNGMGEAARGEAAPARRFSSRLFSRRAKRPAAPNGMASSVSTETSEVEFLTGKRPNENSSADISGKTSPS
SAKPSNCVIS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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