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Report for CCDS14103.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14103.1 Public Homo sapiens XY PLCXD1 24 110 108 CCDS HistoryNCBI Gene:55344Re-query CCDS DB by CCDS ID:14103.1Re-query CCDS DB by GeneID:55344See the combined annotation on chromosome X in Sequence ViewerSee the combined annotation on chromosome Y in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14103.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381657.8 ENSP00000371073.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000381657.8Link to Ensembl Protein Viewer:ENSP00000371073.2Re-query CCDS DB by Nucleotide ID:ENST00000381657Re-query CCDS DB by Protein ID:ENSP00000371073
Original member Current member EBI ENST00000399012.6 ENSP00000381976.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000399012.6Link to Ensembl Protein Viewer:ENSP00000381976.1Re-query CCDS DB by Nucleotide ID:ENST00000399012Re-query CCDS DB by Protein ID:ENSP00000381976
Original member Current member NCBI NM_001370370.1 NP_001357299.1 Accepted alive Link to Nucleotide Sequence:NM_001370370.1Link to Protein Sequence:NP_001357299.1Re-query CCDS DB by Nucleotide ID:NM_001370370Re-query CCDS DB by Protein ID:NP_001357299Link to BLAST:NP_001357299.1
Original member Current member NCBI NM_001370371.1 NP_001357300.1 Accepted alive Link to Nucleotide Sequence:NM_001370371.1Link to Protein Sequence:NP_001357300.1Re-query CCDS DB by Nucleotide ID:NM_001370371Re-query CCDS DB by Protein ID:NP_001357300Link to BLAST:NP_001357300.1
Original member Current member NCBI NM_001370373.1 NP_001357302.1 Accepted alive Link to Nucleotide Sequence:NM_001370373.1Link to Protein Sequence:NP_001357302.1Re-query CCDS DB by Nucleotide ID:NM_001370373Re-query CCDS DB by Protein ID:NP_001357302Link to BLAST:NP_001357302.1
Original member Current member NCBI NM_018390.4 NP_060860.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018390.4Link to Protein Sequence:NP_060860.1Re-query CCDS DB by Nucleotide ID:NM_018390Re-query CCDS DB by Protein ID:NP_060860Link to BLAST:NP_060860.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001357299.1 323 Q9NUJ7 323 100% 0 0
NP_001357300.1 323 Q9NUJ7 323 100% 0 0
NP_001357302.1 323 Q9NUJ7 323 100% 0 0
NP_060860.1 323 Q9NUJ7 323 100% 0 0

Chromosomal Locations for CCDS 14103.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11) On '+' strand of Chromosome Y (NC_000024.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome YSee the combined annotation on chromosome Y in Sequence Viewer

Chromosome Start Stop Links
X 284188 284314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 288733 288869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 290648 290776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 291499 291654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 293035 293218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 299097 299335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

Chromosome Start Stop Links
Y 284188 284314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 288733 288869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 290648 290776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 291499 291654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 293035 293218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 299097 299335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (972 nt):
ATGGGTGGGCAGGTGAGCGCTTCCAACAGCTTCTCGAGGCTGCACTGCAGAAATGCCAACGAGGACTGGA
TGTCGGCACTGTGTCCCCGGCTCTGGGATGTGCCCCTCCACCACCTCTCCATCCCAGGGAGCCACGACAC
GATGACGTACTGCCTGAACAAGAAGTCCCCCATTTCGCACGAGGAGTCCCGGCTGCTGCAGCTGCTGAAC
AAGGCCTTGCCCTGCATCACGCGCCCTGTCGTGCTGAAATGGTCCGTCACCCAGGCACTGGACGTCACAG
AGCAGCTGGATGCCGGGGTGCGGTACCTGGACCTGCGGATAGCCCACATGCTGGAGGGCTCGGAGAAGAA
CCTGCACTTTGTCCATATGGTGTACACAACGGCGCTGGTGGAGGACACACTCACGGAAATCTCGGAGTGG
CTGGAGCGGCATCCACGCGAGGTGGTCATCCTGGCCTGCAGAAACTTCGAGGGGCTGAGCGAGGACCTGC
ACGAGTACCTGGTCGCCTGTATCAAGAACATCTTCGGGGACATGCTGTGTCCTCGTGGGGAGGTGCCGAC
ACTGCGGCAGCTGTGGTCCCGGGGCCAACAGGTCATCGTCTCCTATGAAGACGAGAGCTCCTTGCGCCGG
CACCACGAGCTGTGGCCAGGAGTCCCCTACTGGTGGGGAAACAGGGTGAAGACCGAGGCCCTCATCCGAT
ACCTGGAGACCATGAAGAGCTGCGGCCGCCCAGGAGGGTTGTTCGTGGCCGGCATCAACCTCACGGAGAA
CCTGCAGTACGTTCTGGCGCACCCGTCCGAGTCCCTGGAGAAGATGACGCTGCCCAACCTTCCGCGGCTG
AGCGCGTGGGTCCGAGAGCAGTGCCCGGGGCCGGGTTCACGGTGCACCAACATCATCGCGGGGGACTTCA
TCGGCGCAGACGGCTTCGTCAGTGACGTCATCGCGCTCAATCAGAAGCTGCTGTGGTGCTGA

Translation (323 aa):
MGGQVSASNSFSRLHCRNANEDWMSALCPRLWDVPLHHLSIPGSHDTMTYCLNKKSPISHEESRLLQLLN
KALPCITRPVVLKWSVTQALDVTEQLDAGVRYLDLRIAHMLEGSEKNLHFVHMVYTTALVEDTLTEISEW
LERHPREVVILACRNFEGLSEDLHEYLVACIKNIFGDMLCPRGEVPTLRQLWSRGQQVIVSYEDESSLRR
HHELWPGVPYWWGNRVKTEALIRYLETMKSCGRPGGLFVAGINLTENLQYVLAHPSESLEKMTLPNLPRL
SAWVREQCPGPGSRCTNIIAGDFIGADGFVSDVIALNQKLLWC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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