NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS1416.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1416.1 Public Homo sapiens 1 SHISA4 24 110 108 CCDS HistoryNCBI Gene:149345Re-query CCDS DB by CCDS ID:1416.1Re-query CCDS DB by GeneID:149345See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1416.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000362011.7 ENSP00000355064.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000362011.7Link to Ensembl Protein Viewer:ENSP00000355064.7Re-query CCDS DB by Nucleotide ID:ENST00000362011Re-query CCDS DB by Protein ID:ENSP00000355064
Original member Current member NCBI NM_198149.3 NP_937792.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198149.3Link to Protein Sequence:NP_937792.2Re-query CCDS DB by Nucleotide ID:NM_198149Re-query CCDS DB by Protein ID:NP_937792Link to BLAST:NP_937792.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_937792.2 197 Q96DD7 197 100% 0 0

Chromosomal Locations for CCDS 1416.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 201888995 201889067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201889445 201889616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201890454 201890587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201891401 201891568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201891800 201891846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (594 nt):
ATGCCACCCGCGGGGCTCCGCCGGGCCGCGCCGCTCACCGCAATCGCTCTGTTGGTGCTGGGGGCTCCCC
TGGTGCTGGCCGGCGAGGACTGCCTGTGGTACCTGGACCGGAATGGCTCCTGGCATCCGGGGTTTAACTG
CGAGTTCTTCACCTTCTGCTGCGGGACCTGCTACCATCGGTACTGCTGCAGGGACCTGACCTTGCTTATC
ACCGAGAGGCAGCAGAAGCACTGCCTGGCCTTCAGCCCCAAGACCATAGCAGGCATCGCCTCAGCTGTGA
TCCTCTTTGTTGCTGTGGTTGCCACCACCATCTGCTGCTTCCTCTGTTCCTGTTGCTACCTGTACCGCCG
GCGCCAGCAGCTCCAGAGCCCATTTGAAGGCCAGGAGATTCCAATGACAGGCATCCCAGTGCAGCCAGTA
TACCCATACCCCCAGGACCCCAAAGCTGGCCCTGCACCCCCACAGCCTGGCTTCATATACCCACCTAGTG
GTCCTGCTCCCCAATATCCACTCTACCCAGCTGGGCCCCCAGTCTACAACCCTGCAGCTCCTCCTCCCTA
TATGCCACCACAGCCCTCTTACCCGGGAGCCTGA

Translation (197 aa):
MPPAGLRRAAPLTAIALLVLGAPLVLAGEDCLWYLDRNGSWHPGFNCEFFTFCCGTCYHRYCCRDLTLLI
TERQQKHCLAFSPKTIAGIASAVILFVAVVATTICCFLCSCCYLYRRRQQLQSPFEGQEIPMTGIPVQPV
YPYPQDPKAGPAPPQPGFIYPPSGPAPQYPLYPAGPPVYNPAAPPPYMPPQPSYPGA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH