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Report for CCDS14360.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14360.1 Public Homo sapiens X GNL3L 24 110 108 CCDS HistoryNCBI Gene:54552Re-query CCDS DB by CCDS ID:14360.1Re-query CCDS DB by GeneID:54552See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14360.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000336470.8 ENSP00000338573.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000336470.8Link to Ensembl Protein Viewer:ENSP00000338573.4Re-query CCDS DB by Nucleotide ID:ENST00000336470Re-query CCDS DB by Protein ID:ENSP00000338573
Original member Current member EBI ENST00000360845.3 ENSP00000354091.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000360845.3Link to Ensembl Protein Viewer:ENSP00000354091.2Re-query CCDS DB by Nucleotide ID:ENST00000360845Re-query CCDS DB by Protein ID:ENSP00000354091
Original member Current member EBI ENST00000674498.1 ENSP00000501411.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000674498.1Link to Ensembl Protein Viewer:ENSP00000501411.1Re-query CCDS DB by Nucleotide ID:ENST00000674498Re-query CCDS DB by Protein ID:ENSP00000501411
Original member Current member EBI ENST00000674225.1 ENSP00000501441.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000674225.1Link to Ensembl Protein Viewer:ENSP00000501441.1Re-query CCDS DB by Nucleotide ID:ENST00000674225Re-query CCDS DB by Protein ID:ENSP00000501441
Original member Current member EBI ENST00000674311.1 ENSP00000501452.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000674311.1Link to Ensembl Protein Viewer:ENSP00000501452.1Re-query CCDS DB by Nucleotide ID:ENST00000674311Re-query CCDS DB by Protein ID:ENSP00000501452
Original member Current member NCBI NM_001184819.2 NP_001171748.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001184819.2Link to Protein Sequence:NP_001171748.1Re-query CCDS DB by Nucleotide ID:NM_001184819Re-query CCDS DB by Protein ID:NP_001171748Link to BLAST:NP_001171748.1
Original member Current member NCBI NM_019067.6 NP_061940.1 Accepted alive Link to Nucleotide Sequence:NM_019067.6Link to Protein Sequence:NP_061940.1Re-query CCDS DB by Nucleotide ID:NM_019067Re-query CCDS DB by Protein ID:NP_061940Link to BLAST:NP_061940.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171748.1 582 Q9NVN8 582 100% 0 0
NP_061940.1 582 Q9NVN8 582 100% 0 0

Chromosomal Locations for CCDS 14360.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 54532567 54532585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54539040 54539101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54540135 54540242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54541273 54541389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54542955 54543038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54543207 54543342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54544223 54544326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54548229 54548373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54550963 54551050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54551568 54551742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54551832 54551974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54552292 54552428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54554565 54554692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54558436 54558655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54560520 54560602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1749 nt):
ATGATGAAACTTAGACACAAAAATAAAAAGCCAGGTGAAGGTTCCAAGGGCCACAAGAAGATAAGTTGGC
CCTACCCTCAGCCTGCAAAGCAAAATGGGAAGAAAGCAACCTCCAAAGTGCCCTCTGCACCTCATTTTGT
TCACCCCAATGATCATGCCAATCGAGAGGCTGAATTAAAGAAGAAGTGGGTTGAGGAGATGAGGGAGAAG
CAGCAAGCCGCCCGGGAGCAAGAAAGACAAAAACGCAGGACCATTGAGAGCTACTGTCAGGATGTCCTAA
GACGCCAGGAGGAGTTTGAGCATAAGGAGGAAGTTTTGCAGGAATTAAATATGTTTCCTCAGCTGGATGA
CGAGGCCACGAGGAAGGCTTATTACAAGGAGTTCCGTAAGGTGGTGGAATACTCTGATGTGATTCTGGAA
GTCCTGGATGCCAGAGACCCATTAGGCTGCCGCTGCTTCCAAATGGAGGAGGCTGTCCTGCGAGCACAAG
GCAACAAGAAGCTGGTCCTGGTCTTGAACAAGATTGACCTGGTCCCCAAGGAGGTTGTGGAGAAATGGCT
GGATTACCTTCGGAATGAGTTGCCAACCGTGGCTTTCAAGGCCAGTACCCAGCATCAGGTCAAAAACCTG
AATCGTTGCAGTGTGCCAGTAGATCAGGCCTCTGAGTCACTGCTGAAAAGCAAAGCCTGCTTTGGAGCTG
AAAACCTCATGAGGGTTCTGGGGAACTATTGCCGCCTTGGTGAAGTGCGCACCCACATTCGTGTGGGTGT
TGTGGGTCTTCCCAATGTTGGGAAGAGCAGCCTGATCAATAGCCTGAAGCGCAGCCGCGCATGCAGCGTG
GGAGCTGTTCCTGGAATTACCAAATTCATGCAGGAGGTCTACCTGGACAAGTTCATCCGGCTCTTGGATG
CTCCAGGCATTGTCCCAGGGCCCAACTCAGAGGTGGGCACCATCCTGCGTAACTGCGTCCACGTGCAGAA
GCTGGCAGACCCTGTGACCCCAGTGGAGACCATCCTGCAGCGCTGCAACCTGGAGGAGATTTCCAACTAT
TATGGCGTCTCTGGGTTCCAGACCACTGAGCACTTTCTGACGGCAGTGGCCCACCGTTTGGGGAAGAAGA
AGAAGGGAGGCTTATATAGTCAGGAACAGGCGGCCAAAGCTGTCCTAGCTGACTGGGTGAGCGGGAAGAT
CAGCTTCTATATACCACCACCAGCCACTCACACTCTGCCCACCCATCTCAGTGCTGAGATCGTTAAGGAA
ATGACCGAGGTCTTTGACATCGAGGATACTGAGCAGGCCAATGAAGACACCATGGAATGCTTGGCCACCG
GAGAATCTGATGAGCTGTTGGGTGACACGGACCCACTTGAAATGGAGATCAAGTTGCTCCATTCTCCGAT
GACGAAAATAGCAGATGCCATTGAAAATAAAACCACCGTGTATAAGATTGGAGATCTCACTGGGTATTGC
ACCAATCCGAACCGTCATCAGATGGGGTGGGCTAAACGCAATGTGGACCACCGCCCTAAGAGCAACAGTA
TGGTGGATGTCTGCTCAGTGGACCGCCGCTCAGTGCTGCAGAGGATCATGGAGACGGACCCCCTGCAACA
GGGCCAGGCTCTGGCATCTGCCCTGAAAAATAAGAAGAAGATGCAGAAACGTGCAGATAAAATCGCCAGC
AAGCTGTCTGATTCCATGATGTCTGCTCTCGACCTCTCTGGCAATGCTGATGATGGTGTTGGTGACTAA

Translation (582 aa):
MMKLRHKNKKPGEGSKGHKKISWPYPQPAKQNGKKATSKVPSAPHFVHPNDHANREAELKKKWVEEMREK
QQAAREQERQKRRTIESYCQDVLRRQEEFEHKEEVLQELNMFPQLDDEATRKAYYKEFRKVVEYSDVILE
VLDARDPLGCRCFQMEEAVLRAQGNKKLVLVLNKIDLVPKEVVEKWLDYLRNELPTVAFKASTQHQVKNL
NRCSVPVDQASESLLKSKACFGAENLMRVLGNYCRLGEVRTHIRVGVVGLPNVGKSSLINSLKRSRACSV
GAVPGITKFMQEVYLDKFIRLLDAPGIVPGPNSEVGTILRNCVHVQKLADPVTPVETILQRCNLEEISNY
YGVSGFQTTEHFLTAVAHRLGKKKKGGLYSQEQAAKAVLADWVSGKISFYIPPPATHTLPTHLSAEIVKE
MTEVFDIEDTEQANEDTMECLATGESDELLGDTDPLEMEIKLLHSPMTKIADAIENKTTVYKIGDLTGYC
TNPNRHQMGWAKRNVDHRPKSNSMVDVCSVDRRSVLQRIMETDPLQQGQALASALKNKKKMQKRADKIAS
KLSDSMMSALDLSGNADDGVGD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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