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Report for CCDS14372.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14372.1 Public Homo sapiens X RRAGB 24 110 108 CCDS HistoryNCBI Gene:10325Re-query CCDS DB by CCDS ID:14372.1Re-query CCDS DB by GeneID:10325See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14372.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000262850.7 ENSP00000262850.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000262850.7Link to Ensembl Protein Viewer:ENSP00000262850.7Re-query CCDS DB by Nucleotide ID:ENST00000262850Re-query CCDS DB by Protein ID:ENSP00000262850
Original member Current member NCBI NM_016656.4 NP_057740.2 Accepted alive Link to Nucleotide Sequence:NM_016656.4Link to Protein Sequence:NP_057740.2Re-query CCDS DB by Nucleotide ID:NM_016656Re-query CCDS DB by Protein ID:NP_057740Link to BLAST:NP_057740.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057740.2 374 Q5VZM2-1 374 100% 0 0

Chromosomal Locations for CCDS 14372.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 55718328 55718419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 55719314 55719347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 55722186 55722285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 55727307 55727390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 55729294 55729360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 55731364 55731586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 55751101 55751196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 55753392 55753514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 55755841 55755932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 55757216 55757331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 55758246 55758343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1125 nt):
ATGGAAGAATCTGACTCTGAGAAAACGACGGAGAAAGAAAATCTGGGGCCGAGAATGGATCCACCACTAG
GGGAACCGGAAGGATCGCTTGGGTGGGTGCTACCAAATACAGCCATGAAGAAAAAGGTGCTGTTGATGGG
TAAAAGTGGGTCTGGTAAGACCAGCATGAGGTCTATTATCTTTGCAAATTATATTGCCAGAGACACACGT
CGCCTTGGCGCAACAATACTAGACCGTATACATAGTCTTCAAATTAATAGCAGTTTGAGCACCTACTCTC
TCGTAGACTCTGTTGGAAATACAAAGACATTTGATGTAGAACATTCTCATGTTCGATTTCTGGGAAACCT
GGTATTGAACCTGTGGGATTGTGGTGGGCAAGACACCTTCATGGAAAATTATTTCACTAGCCAACGGGAC
AACATCTTCCGAAATGTGGAGGTTCTGATTTATGTCTTTGATGTGGAGAGCCGCGAACTGGAAAAGGACA
TGCACTATTACCAATCATGCCTGGAGGCCATTCTGCAGAATTCTCCAGATGCCAAAATATTTTGCTTGGT
ACACAAAATGGATCTGGTACAGGAGGATCAACGGGACCTGATTTTTAAAGAGCGAGAAGAAGATTTGAGG
CGTTTGTCTCGCCCATTGGAATGTTCTTGTTTCCGAACATCTATCTGGGATGAAACCCTCTATAAGGCTT
GGTCCAGCATAGTTTATCAGCTGATTCCCAATGTTCAGCAGCTGGAAATGAACCTAAGGAATTTTGCTGA
AATTATCGAAGCTGATGAAGTACTTCTTTTTGAGAGAGCTACTTTTCTGGTAATTTCTCACTATCAGTGT
AAAGAGCAGCGTGATGCCCATAGATTTGAGAAAATAAGCAACATTATTAAGCAGTTCAAGCTGAGCTGCA
GCAAGCTGGCTGCCTCTTTCCAGAGTATGGAAGTCAGGAACTCTAACTTCGCTGCTTTCATTGACATCTT
TACATCCAACACTTATGTGATGGTTGTGATGTCTGATCCGTCCATTCCTTCTGCAGCTACTCTGATCAAC
ATCCGCAATGCCAGGAAACACTTTGAAAAGCTGGAAAGAGTGGATGGACCAAAGCAGTGTCTTCTCATGC
GCTAA

Translation (374 aa):
MEESDSEKTTEKENLGPRMDPPLGEPEGSLGWVLPNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTR
RLGATILDRIHSLQINSSLSTYSLVDSVGNTKTFDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRD
NIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDLIFKEREEDLR
RLSRPLECSCFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAEIIEADEVLLFERATFLVISHYQC
KEQRDAHRFEKISNIIKQFKLSCSKLAASFQSMEVRNSNFAAFIDIFTSNTYVMVVMSDPSIPSAATLIN
IRNARKHFEKLERVDGPKQCLLMR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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