NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS14389.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14389.1 Public Homo sapiens X YIPF6 24 110 108 CCDS HistoryNCBI Gene:286451Re-query CCDS DB by CCDS ID:14389.1Re-query CCDS DB by GeneID:286451See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14389.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000462683.6 ENSP00000417573.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000462683.6Link to Ensembl Protein Viewer:ENSP00000417573.1Re-query CCDS DB by Nucleotide ID:ENST00000462683Re-query CCDS DB by Protein ID:ENSP00000417573
Original member Current member NCBI NM_173834.4 NP_776195.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173834.4Link to Protein Sequence:NP_776195.2Re-query CCDS DB by Nucleotide ID:NM_173834Re-query CCDS DB by Protein ID:NP_776195Link to BLAST:NP_776195.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_776195.2 236 Q96EC8-1 236 100% 0 0

Chromosomal Locations for CCDS 14389.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 68499067 68499123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 68511849 68511977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 68513327 68513405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 68518770 68518812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 68521372 68521497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 68522760 68522917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 68531881 68531999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (711 nt):
ATGGCGGAAGCGGAGGAGTCTCCAGGAGACCCGGGGACAGCATCGCCCAGGCCCCTGTTTGCAGGCCTTT
CAGATATATCCATCTCACAAGACATCCCCGTAGAAGGAGAAATCACCATTCCTATGAGATCTCGCATCCG
GGAGTTTGACAGCTCCACATTAAATGAATCTGTTCGCAATACCATCATGCGTGATCTAAAAGCTGTTGGG
AAAAAATTCATGCATGTTTTGTACCCAAGGAAAAGTAATACTCTTTTGAGAGATTGGGATTTGTGGGGCC
CTTTGATCCTTTGTGTGACACTCGCATTAATGCTGCAAAGAGACTCTGCAGATAGTGAAAAAGATGGAGG
GCCCCAATTTGCAGAGGTGTTTGTCATTGTCTGGTTTGGTGCAGTTACCATCACCCTCAACTCAAAACTT
CTTGGAGGGAACATATCTTTTTTTCAGAGCCTCTGTGTGCTGGGTTACTGTATACTTCCCTTGACAGTAG
CAATGCTGATTTGCCGGCTGGTACTTTTGGCTGATCCAGGACCTGTAAACTTCATGGTTCGGCTTTTTGT
GGTGATTGTGATGTTTGCCTGGTCTATAGTTGCCTCCACAGCTTTCCTTGCTGATAGCCAGCCTCCAAAC
CGCAGAGCCCTAGCTGTTTATCCTGTTTTCCTGTTTTACTTTGTCATCAGTTGGATGATTCTCACCTTTA
CTCCTCAGTAA

Translation (236 aa):
MAEAEESPGDPGTASPRPLFAGLSDISISQDIPVEGEITIPMRSRIREFDSSTLNESVRNTIMRDLKAVG
KKFMHVLYPRKSNTLLRDWDLWGPLILCVTLALMLQRDSADSEKDGGPQFAEVFVIVWFGAVTITLNSKL
LGGNISFFQSLCVLGYCILPLTVAMLICRLVLLADPGPVNFMVRLFVVIVMFAWSIVASTAFLADSQPPN
RRALAVYPVFLFYFVISWMILTFTPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH