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Report for CCDS14405.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14405.1 Public Homo sapiens X SNX12 24 110 108 CCDS HistoryNCBI Gene:29934Re-query CCDS DB by CCDS ID:14405.1Re-query CCDS DB by GeneID:29934See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14405.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374274.8 ENSP00000363392.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000374274.8Link to Ensembl Protein Viewer:ENSP00000363392.3Re-query CCDS DB by Nucleotide ID:ENST00000374274Re-query CCDS DB by Protein ID:ENSP00000363392
Original member Current member EBI ENST00000622277.4 ENSP00000481314.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000622277.4Link to Ensembl Protein Viewer:ENSP00000481314.1Re-query CCDS DB by Nucleotide ID:ENST00000622277Re-query CCDS DB by Protein ID:ENSP00000481314
Original member Current member NCBI NM_001256185.2 NP_001243114.1 Accepted alive Link to Nucleotide Sequence:NM_001256185.2Link to Protein Sequence:NP_001243114.1Re-query CCDS DB by Nucleotide ID:NM_001256185Re-query CCDS DB by Protein ID:NP_001243114Link to BLAST:NP_001243114.1
Original member Current member NCBI NM_013346.4 NP_037478.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_013346.4Link to Protein Sequence:NP_037478.2Re-query CCDS DB by Nucleotide ID:NM_013346Re-query CCDS DB by Protein ID:NP_037478Link to BLAST:NP_037478.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243114.1 162 Q9UMY4-2 162 100% 0 0
NP_037478.2 162 Q9UMY4-2 162 100% 0 0

Chromosomal Locations for CCDS 14405.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 71061016 71061118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71061843 71061967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71062854 71062949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71068142 71068306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (489 nt):
ATGTCGGACACGGCAGTAGCTGATACCCGGCGCCTTAACTCGAAGCCGCAGGACCTGACCGACGCTTACG
GGCCGCCAAGTAACTTCCTGGAGATCGACATCTTTAATCCTCAGACGGTGGGCGTGGGACGCGCGCGCTT
CACCACCTATGAGGTTCGCATGCGGACAAACCTACCTATCTTCAAGCTAAAGGAGTCCTGCGTACGGCGG
CGCTACAGTGACTTTGAGTGGCTGAAAAATGAGCTGGAGAGAGATAGCAAGATTGTAGTACCACCACTGC
CTGGGAAAGCCTTGAAGCGGCAGCTCCCTTTCCGAGGAGATGAAGGGATCTTTGAGGAGTCTTTCATCGA
AGAAAGGAGGCAGGGCCTCGAGCAGTTTATTAACAAAATTGCTGGGCACCCACTGGCTCAGAATGAACGC
TGCCTACACATGTTCCTGCAAGAGGAGGCAATTGACAGGAACTACGTCCCGGGGAAGGTGCGCCAGTAG

Translation (162 aa):
MSDTAVADTRRLNSKPQDLTDAYGPPSNFLEIDIFNPQTVGVGRARFTTYEVRMRTNLPIFKLKESCVRR
RYSDFEWLKNELERDSKIVVPPLPGKALKRQLPFRGDEGIFEESFIEERRQGLEQFINKIAGHPLAQNER
CLHMFLQEEAIDRNYVPGKVRQ


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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