NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS14503.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14503.1 Public Homo sapiens X NXF3 24 110 108 CCDS HistoryNCBI Gene:56000Re-query CCDS DB by CCDS ID:14503.1Re-query CCDS DB by GeneID:56000See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14503.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000395065.8 ENSP00000378504.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000395065.8Link to Ensembl Protein Viewer:ENSP00000378504.3Re-query CCDS DB by Nucleotide ID:ENST00000395065Re-query CCDS DB by Protein ID:ENSP00000378504
Original member Current member NCBI NM_022052.2 NP_071335.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022052.2Link to Protein Sequence:NP_071335.1Re-query CCDS DB by Nucleotide ID:NM_022052Re-query CCDS DB by Protein ID:NP_071335Link to BLAST:NP_071335.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071335.1 531 Q9H4D5-1 531 100% 0 0

Chromosomal Locations for CCDS 14503.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 103076290 103076301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 103077614 103077746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 103078560 103078632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 103079221 103079263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 103079359 103079474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 103079584 103079642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 103079763 103079870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 103080013 103080068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 103080148 103080216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 103080576 103080612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 103082255 103082364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 103082760 103082848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 103083004 103083073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 103083193 103083273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 103083398 103083502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 103083609 103083692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 103084342 103084495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 103084715 103084883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 103092996 103093023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1596 nt):
ATGTCACTGCCTTCAGGACACACTACGGGTCACACTGATCAAGTTGTTCAAAGAAGAGCAAGATGTTGGG
ATATTTACCAAAGGAGATTTAGCAGTAGGTCTGAACCTGTCAATCCTGGCATGCATTCTTCATCCCATCA
GCAGCAAGATGGAGATGCAGCAATGCATGGTGCCCACATGGACTCTCCAGTAAGATACACTCCCTATACT
ATTTCACCCTATAATCGGAAAGGCAGTTTTCGTAAACAAGACCAAACCCACGTTAACATGGAGAGAGAGC
AAAAACCTCCAGAGAGAAGAATGGAGGGGAACATGCCGGATGGGACCTTAGGGAGCTGGTTCAAGATCAC
AGTTCCCTTTGGCATAAAATACAATGAGAAGTGGCTGCTGAATTTGATTCAGAATGAATGCAGTGTACCC
TTCGTCCCAGTTGAGTTTCACTATGAAAACATGCATGCCAGCTTCTTTGTGGAGAATGCCAGCATCGCCT
ATGCACTGAAGAATGTCAGTGGCAAGATTTGGGATGAGGATAATGAAAAGATATCAATCTTTGTCAACCC
TGCTGGCATACCCCACTTTGTGCACAGGGAGCTGAAGTCAGAAAAGGTGGAGCAGATAAAGCTGGCCATG
AACCAACAGTGTGATGTCTCCCAGGAAGCTCTTGATATCCAGAGACTCCCATTTTACCCAGACATGGTGA
ACCGTGATACTAAGATGGCATCGAATCCTAGAAAGTGCATGGCTGCCTCCCTGGACGTCCATGAAGAGAA
CATACCTACAGTGATGTCTGCAGGGGAGATGGACAAGTGGAAAGGGATAGAGCCAGGAGAGAAGTGTGCG
GACAGAAGCCCAGTGTGCACGACCTTCTCGGATACCTCCAGCAACATAAACTCCATCCTGGAATTGTTCC
CCAAATTATTATGCCTGGATGGCCAGCAGTCACCCAGAGCAACTTTATGTGGTACTGAAGCCCACAAGAG
GTTACCAACCTGTAAGGGAAGCTTCTTTGGATCTGAGATGTTGAAGAATCTGGTCCTGCAATTCCTGCAG
CAGTATTACTTGATCTATGACTCTGGAGATCGACAGGGTCTCCTTAGTGCTTACCACGATGAGGCCTGCT
TCTCCCTGAGCATTCCCTTCAATCCTGAGGACTCAGCCCCGAGCAGCTTCTGCAAGTTCTTCAAGGATAG
CAGGAATATAAAAATTCTCAAGGACCCCTACCTTCGGGGGGAGCTGCTGAAGCACACAAAACTTGATATT
GTGGACTCCCTCAGTGCGTTGCCTAAAACTCAGCATGACCTCAGCTCCTTCCTGGTGGACATGTGGTACC
AGACGGAATGGATGCTCTGCTTTTCTGTCAACGGGGTGTTCAAGGAAGTGGAAGGACAGTCTCAGGGTTC
TGTTCTCGCCTTCACCCGGACCTTCATTGCTACCCCTGGCAGCAGTTCCAGTCTGTGCATCGTGAATGAC
AAGCTCTTTGTGCGGGATACCAGCCACCAAGGGACCCAGAGTGCCTTGTTCACCCTAGTGCCCACAGCCT
TCTCCAGCTCCGTGCCTGCCTTCTCCCAGGAGCAGCAGAAAATGCTGCCTTCGTAA

Translation (531 aa):
MSLPSGHTTGHTDQVVQRRARCWDIYQRRFSSRSEPVNPGMHSSSHQQQDGDAAMHGAHMDSPVRYTPYT
ISPYNRKGSFRKQDQTHVNMEREQKPPERRMEGNMPDGTLGSWFKITVPFGIKYNEKWLLNLIQNECSVP
FVPVEFHYENMHASFFVENASIAYALKNVSGKIWDEDNEKISIFVNPAGIPHFVHRELKSEKVEQIKLAM
NQQCDVSQEALDIQRLPFYPDMVNRDTKMASNPRKCMAASLDVHEENIPTVMSAGEMDKWKGIEPGEKCA
DRSPVCTTFSDTSSNINSILELFPKLLCLDGQQSPRATLCGTEAHKRLPTCKGSFFGSEMLKNLVLQFLQ
QYYLIYDSGDRQGLLSAYHDEACFSLSIPFNPEDSAPSSFCKFFKDSRNIKILKDPYLRGELLKHTKLDI
VDSLSALPKTQHDLSSFLVDMWYQTEWMLCFSVNGVFKEVEGQSQGSVLAFTRTFIATPGSSSSLCIVND
KLFVRDTSHQGTQSALFTLVPTAFSSSVPAFSQEQQKMLPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH