NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS14608.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14608.1 Public Homo sapiens X SH2D1A 24 110 108 CCDS HistoryNCBI Gene:4068Re-query CCDS DB by CCDS ID:14608.1Re-query CCDS DB by GeneID:4068See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14608.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371139.9 ENSP00000360181.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371139.9Link to Ensembl Protein Viewer:ENSP00000360181.5Re-query CCDS DB by Nucleotide ID:ENST00000371139Re-query CCDS DB by Protein ID:ENSP00000360181
Original member Current member EBI ENST00000698113.1 ENSP00000513571.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000698113.1Link to Ensembl Protein Viewer:ENSP00000513571.1Re-query CCDS DB by Nucleotide ID:ENST00000698113Re-query CCDS DB by Protein ID:ENSP00000513571
Original member Current member EBI ENST00000698116.1 ENSP00000513572.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000698116.1Link to Ensembl Protein Viewer:ENSP00000513572.1Re-query CCDS DB by Nucleotide ID:ENST00000698116Re-query CCDS DB by Protein ID:ENSP00000513572
Original member Current member EBI ENST00000698118.1 ENSP00000513574.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000698118.1Link to Ensembl Protein Viewer:ENSP00000513574.1Re-query CCDS DB by Nucleotide ID:ENST00000698118Re-query CCDS DB by Protein ID:ENSP00000513574
Original member Current member NCBI NM_002351.5 NP_002342.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002351.5Link to Protein Sequence:NP_002342.1Re-query CCDS DB by Nucleotide ID:NM_002351Re-query CCDS DB by Protein ID:NP_002342Link to BLAST:NP_002342.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002342.1 128 O60880-1 128 100% 0 0

Chromosomal Locations for CCDS 14608.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 124346643 124346779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 124365761 124365824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 124370176 124370320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 124371351 124371391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (387 nt):
ATGGACGCAGTGGCTGTGTATCATGGCAAAATCAGCAGGGAAACCGGCGAGAAGCTCCTGCTTGCCACTG
GGCTGGATGGCAGCTATTTGCTGAGGGACAGCGAGAGCGTGCCAGGCGTGTACTGCCTATGTGTGCTGTA
TCACGGTTACATTTATACATACCGAGTGTCCCAGACAGAAACAGGTTCTTGGAGTGCTGAGACAGCACCT
GGGGTACATAAAAGATATTTCCGGAAAATAAAAAATCTCATTTCAGCATTTCAGAAGCCAGATCAAGGCA
TTGTAATACCTCTGCAGTATCCAGTTGAGAAGAAGTCCTCAGCTAGAAGTACACAAGGTACTACAGGGAT
AAGAGAAGATCCTGATGTCTGCCTGAAAGCCCCATGA

Translation (128 aa):
MDAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGSWSAETAP
GVHKRYFRKIKNLISAFQKPDQGIVIPLQYPVEKKSSARSTQGTTGIREDPDVCLKAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH