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Report for CCDS14639.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14639.1 Public Homo sapiens X PHF6 24 110 108 CCDS HistoryNCBI Gene:84295Re-query CCDS DB by CCDS ID:14639.1Re-query CCDS DB by GeneID:84295See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14639.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000332070.7 ENSP00000329097.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000332070.7Link to Ensembl Protein Viewer:ENSP00000329097.3Re-query CCDS DB by Nucleotide ID:ENST00000332070Re-query CCDS DB by Protein ID:ENSP00000329097
Original member Current member EBI ENST00000370803.8 ENSP00000359839.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000370803.8Link to Ensembl Protein Viewer:ENSP00000359839.4Re-query CCDS DB by Nucleotide ID:ENST00000370803Re-query CCDS DB by Protein ID:ENSP00000359839
Original member Current member EBI ENST00000691812.1 ENSP00000510211.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000691812.1Link to Ensembl Protein Viewer:ENSP00000510211.1Re-query CCDS DB by Nucleotide ID:ENST00000691812Re-query CCDS DB by Protein ID:ENSP00000510211
Original member Current member NCBI NM_001015877.2 NP_001015877.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001015877.2Link to Protein Sequence:NP_001015877.1Re-query CCDS DB by Nucleotide ID:NM_001015877Re-query CCDS DB by Protein ID:NP_001015877Link to BLAST:NP_001015877.1
Original member Current member NCBI NM_032458.3 NP_115834.1 Accepted alive Link to Nucleotide Sequence:NM_032458.3Link to Protein Sequence:NP_115834.1Re-query CCDS DB by Nucleotide ID:NM_032458Re-query CCDS DB by Protein ID:NP_115834Link to BLAST:NP_115834.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001015877.1 365 Q8IWS0-1 365 100% 0 0
NP_115834.1 365 Q8IWS0-1 365 100% 0 0

Chromosomal Locations for CCDS 14639.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 134377618 134377755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134378005 134378106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134393501 134393634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134393909 134393952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134413491 134413657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134413823 134413966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134415016 134415120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134417169 134417302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134425201 134425330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1098 nt):
ATGTCAAGCTCAGTTGAACAGAAAAAAGGGCCTACAAGACAGCGCAAATGTGGCTTTTGTAAGTCAAATA
GAGACAAGGAATGTGGACAGTTACTAATATCTGAAAACCAGAAGGTGGCAGCGCACCATAAGTGCATGCT
CTTTTCATCTGCTTTGGTATCATCACACTCTGATAATGAAAGTCTTGGTGGATTTTCTATTGAAGATGTC
CAAAAGGAAATTAAAAGAGGCACGAAGCTGATGTGTTCTTTGTGCCATTGTCCTGGAGCAACAATTGGTT
GTGATGTGAAAACATGTCACAGGACATACCACTACCACTGTGCATTGCATGATAAAGCTCAAATACGAGA
GAAACCTTCACAAGGAATTTACATGGTCTATTGCCGAAAACACAAGAAAACTGCACATAACTCCGAAGCT
GATTTAGAAGAAAGTTTTAATGAACATGAACTGGAGCCCTCATCACCTAAAAGTAAAAAGAAAAGTCGCA
AAGGAAGGCCAAGAAAAACTAATTTTAAAGGGCTGTCAGAAGATACCAGGTCCACATCCTCCCATGGAAC
AGATGAAATGGAAAGTAGTTCCTATAGAGATAGGTCTCCACACAGAAGCAGCCCTAGTGACACCAGGCCT
AAATGTGGATTTTGCCATGTAGGGGAGGAAGAAAATGAAGCACGAGGAAAACTGCATATATTTAATGCCA
AGAAGGCAGCTGCCCATTATAAGTGCATGTTGTTTTCTTCTGGCACAGTCCAGCTCACAACAACATCAAG
AGCAGAATTTGGAGACTTTGATATTAAAACTGTACTTCAGGAGATTAAACGAGGAAAAAGAATGAAATGT
ACACTTTGCAGTCAGCCTGGTGCTACTATTGGATGTGAAATAAAAGCCTGTGTTAAGACTTACCATTACC
ACTGTGGAGTACAAGACAAAGCTAAATACATTGAAAATATGTCACGAGGAATTTACAAACTATACTGTAA
AAATCATAGTGGAAATGATGAGAGAGATGAAGAAGATGAGGAACGAGAGAGTAAAAGCCGAGGAAAAGTA
GAAATTGATCAGCAACAACTAACTCAGCAGCAACTTAATGGAAACTAG

Translation (365 aa):
MSSSVEQKKGPTRQRKCGFCKSNRDKECGQLLISENQKVAAHHKCMLFSSALVSSHSDNESLGGFSIEDV
QKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGIYMVYCRKHKKTAHNSEA
DLEESFNEHELEPSSPKSKKKSRKGRPRKTNFKGLSEDTRSTSSHGTDEMESSSYRDRSPHRSSPSDTRP
KCGFCHVGEEENEARGKLHIFNAKKAAAHYKCMLFSSGTVQLTTTSRAEFGDFDIKTVLQEIKRGKRMKC
TLCSQPGATIGCEIKACVKTYHYHCGVQDKAKYIENMSRGIYKLYCKNHSGNDERDEEDEERESKSRGKV
EIDQQQLTQQQLNGN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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