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Report for CCDS14642.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14642.1 Public Homo sapiens X PLAC1 24 110 108 CCDS HistoryNCBI Gene:10761Re-query CCDS DB by CCDS ID:14642.1Re-query CCDS DB by GeneID:10761See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14642.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359237.9 ENSP00000352173.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000359237.9Link to Ensembl Protein Viewer:ENSP00000352173.4Re-query CCDS DB by Nucleotide ID:ENST00000359237Re-query CCDS DB by Protein ID:ENSP00000352173
Original member Current member NCBI NM_001316887.2 NP_001303816.1 Accepted alive Link to Nucleotide Sequence:NM_001316887.2Link to Protein Sequence:NP_001303816.1Re-query CCDS DB by Nucleotide ID:NM_001316887Re-query CCDS DB by Protein ID:NP_001303816Link to BLAST:NP_001303816.1
Original member Current member NCBI NM_001316888.2 NP_001303817.1 Accepted alive Link to Nucleotide Sequence:NM_001316888.2Link to Protein Sequence:NP_001303817.1Re-query CCDS DB by Nucleotide ID:NM_001316888Re-query CCDS DB by Protein ID:NP_001303817Link to BLAST:NP_001303817.1
Original member Current member NCBI NM_001316889.2 NP_001303818.1 Accepted alive Link to Nucleotide Sequence:NM_001316889.2Link to Protein Sequence:NP_001303818.1Re-query CCDS DB by Nucleotide ID:NM_001316889Re-query CCDS DB by Protein ID:NP_001303818Link to BLAST:NP_001303818.1
Original member Current member NCBI NM_021796.4 NP_068568.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021796.4Link to Protein Sequence:NP_068568.1Re-query CCDS DB by Nucleotide ID:NM_021796Re-query CCDS DB by Protein ID:NP_068568Link to BLAST:NP_068568.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001303816.1 212 Q9HBJ0 212 100% 0 0
NP_001303817.1 212 Q9HBJ0 212 100% 0 0
NP_001303818.1 212 Q9HBJ0 212 100% 0 0
NP_068568.1 212 Q9HBJ0 212 100% 0 0

Chromosomal Locations for CCDS 14642.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 134566044 134566682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (639 nt):
ATGAAAGTTTTTAAGTTCATAGGACTGATGATCCTCCTCACCTCTGCGTTTTCAGCCGGTTCAGGACAAA
GTCCAATGACTGTGCTGTGCTCCATAGACTGGTTCATGGTCACAGTGCACCCCTTCATGCTAAACAACGA
TGTGTGTGTACACTTTCATGAACTACACTTGGGCCTGGGTTGCCCCCCAAACCATGTTCAGCCACACGCC
TACCAGTTCACCTACCGTGTTACTGAATGTGGCATCAGGGCCAAAGCTGTCTCTCAGGACATGGTTATCT
ACAGCACTGAGATACACTACTCTTCTAAGGGCACGCCATCTAAGTTTGTGATCCCAGTGTCATGTGCTGC
CCCCCAAAAGTCCCCATGGCTCACCAAGCCCTGCTCCATGAGAGTAGCCAGCAAGAGCAGGGCCACAGCC
CAGAAGGATGAGAAATGCTACGAGGTGTTCAGCTTGTCACAGTCCAGTCAAAGGCCCAACTGCGATTGTC
CACCTTGTGTCTTCAGTGAAGAAGAGCATACCCAGGTCCCTTGTCACCAAGCAGGGGCTCAGGAGGCTCA
ACCTCTGCAGCCATCTCACTTTCTTGATATTTCTGAGGATTGGTCTCTTCACACAGATGATATGATTGGG
TCCATGTGA

Translation (212 aa):
MKVFKFIGLMILLTSAFSAGSGQSPMTVLCSIDWFMVTVHPFMLNNDVCVHFHELHLGLGCPPNHVQPHA
YQFTYRVTECGIRAKAVSQDMVIYSTEIHYSSKGTPSKFVIPVSCAAPQKSPWLTKPCSMRVASKSRATA
QKDEKCYEVFSLSQSSQRPNCDCPPCVFSEEEHTQVPCHQAGAQEAQPLQPSHFLDISEDWSLHTDDMIG
SM


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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